View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12873_high_2 (Length: 717)

Name: NF12873_high_2
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12873_high_2
NF12873_high_2
[»] chr8 (4 HSPs)
chr8 (51-705)||(26463243-26463902)
chr8 (479-545)||(16032879-16032946)
chr8 (373-460)||(34552609-34552696)
chr8 (480-525)||(30581853-30581898)
[»] chr6 (5 HSPs)
chr6 (516-614)||(14368178-14368277)
chr6 (161-285)||(14367655-14367777)
chr6 (643-705)||(14368274-14368336)
chr6 (57-104)||(14367550-14367597)
chr6 (336-394)||(14367864-14367921)
[»] chr5 (3 HSPs)
chr5 (371-536)||(1977579-1977742)
chr5 (373-430)||(25627770-25627827)
chr5 (479-544)||(38903598-38903663)
[»] chr4 (5 HSPs)
chr4 (476-545)||(11842460-11842529)
chr4 (377-463)||(47694401-47694487)
chr4 (479-545)||(4694232-4694299)
chr4 (373-467)||(18516573-18516667)
chr4 (480-522)||(55029705-55029747)
[»] chr2 (2 HSPs)
chr2 (480-545)||(25846009-25846074)
chr2 (373-455)||(21662323-21662405)
[»] chr1 (5 HSPs)
chr1 (373-463)||(27739099-27739189)
chr1 (479-522)||(11045485-11045528)
chr1 (478-525)||(49065613-49065660)
chr1 (480-522)||(44996585-44996627)
chr1 (376-434)||(51303711-51303769)
[»] chr3 (1 HSPs)
chr3 (414-467)||(13803870-13803923)


Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 51 - 705
Target Start/End: Original strand, 26463243 - 26463902
Alignment:
Q  51 aataaccatatcaaaccaactcgttcttcatcaattcagtttgaaattcatgaggnnnnnnnnttgaatcaaatgaaaccaatcatgttgtagtagtttg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||||||    
T  26463243 aataaccatatcaaaccaactcgttcttcatcaattcagtttgaaattcatgagggaaaaaaattgaatcaaatgaaaccaatcattttgtagtagtttg 26463342  T
Q  151 gannnnnnncccatcaaaaacttaaaccaaaccaactcgatacacccgtaacgctgcatagaaaaaactagatttaaatatgaactctgaaaaaagtagt 250  Q
    ||       |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26463343 gatttttt-cccatcaaaaacttaaaccaaaccaactcgatacacccttaacgctgcatagaaaaaactagatttaaatatgaactctgaaaaaagtagt 26463441  T
Q  251 gcttaggttgttcacattagacaaagtgccactggcaacttgcttgctcatggttt----gctccaagtatctcatttcaaaaccaaacaaaatttggtt 346  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||||||    
T  26463442 gcttaggttgttcacattagagaaagtgccactggcaacttgcttgctcatggtttgtttgctccaattatctcatttcaaaaccaaacaaaatttggtt 26463541  T
Q  347 tgttgattttggttttgcagaggtctttacttttctcttttaaattatgtacgctatgaaatgctttttaaaatcaattaagtgtgatcaaaggattata 446  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  26463542 tgttgattttggtttcgcagaggtgtttacctttctcttttaaattatgtacacgatgaaatgctttttaaaatcaattaagtgtgatcaaaggattata 26463641  T
Q  447 caatcatttatcatgttctttgaaaacaattaaaaatatcaaatatattttaaaatatagccttagtcctccaaaatcccctcccaaacagacccttagg 546  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  26463642 caatcatttatcatgttctttgaaaacatttaaaaacatcaaatatattttaaaatatcgccttagtcttccaaaatcccctcccaaacagacccttagg 26463741  T
Q  547 ttgtagtactctcaaaagaatg-caattctaaaataaatttattctcttcttacaatgcaaatctagaagcacattagctagtgtct-ggtaggtcacag 644  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||     
T  26463742 ttgtagtactctgaaaagaatgtcaattctaaaataaatttattctcttcttacaatgcaagtctagaagcacatttgctagtgtctgggtaggtcacat 26463841  T
Q  645 aacaatattaaagctcaaattgggagaggtatctaacatgcatatgaatcgtctctttcat 705  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26463842 aacaatattaaagctcaaattgagagaggtatctaacatgcatatgaatcgtctctttcat 26463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 545
Target Start/End: Complemental strand, 16032946 - 16032879
Alignment:
Q  479 aaaatatcaaatatattttaaaatatagccttagtcctccaaaat-cccctcccaaacagacccttag 545  Q
    ||||| |||||||||| ||||||||||| | ||| |||||||||| ||||||||||| ||||||||||    
T  16032946 aaaatctcaaatatatattaaaatatagacctagccctccaaaatccccctcccaaagagacccttag 16032879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 460
Target Start/End: Original strand, 34552609 - 34552696
Alignment:
Q  373 ttacttttctcttttaaattatgtacgctatgaaatgctttttaaaatcaattaagtgtgatcaaaggattatacaatcatttatcat 460  Q
    ||||||||||||||||||||||  || ||||  |||| |||||||||| ||||||| || ||  ||| ||||||  ||||||||||||    
T  34552609 ttacttttctcttttaaattattgacactatataatgttttttaaaattaattaagcgtaattgaagtattatatgatcatttatcat 34552696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 30581898 - 30581853
Alignment:
Q  480 aaatatcaaatatattttaaaatatagccttagtcctccaaaatcc 525  Q
    ||||||||| ||||||| ||||||||| ||||| ||||||||||||    
T  30581898 aaatatcaattatatttcaaaatatagacttagccctccaaaatcc 30581853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 516 - 614
Target Start/End: Original strand, 14368178 - 14368277
Alignment:
Q  516 tccaaaatcccctcccaaacagacccttaggttgtagtactctcaaaagaatg-caattctaaaataaatttattctcttcttacaatgcaaatctagaa 614  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14368178 tccaaaatcctctcccaaacagacccttaggatgtagtactctcaaaagaatgtcaattctaaaataaatttattctcttcttacaatgcaaatctagaa 14368277  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 14367655 - 14367777
Alignment:
Q  161 ccatcaaaaacttaaaccaaaccaactcgatacacccgtaacgctgcatagaaaaaactagatttaaatatgaactctgaaaaaagtagtgcttaggttg 260  Q
    |||||| ||||||||| |||||||||| | |||  || ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||    
T  14367655 ccatcacaaacttaaatcaaaccaacttgttac--ccttaacgctgcatagaaaaaactaggtttaaatatgaactctcaaaatagtagtgctgaggttg 14367752  T
Q  261 ttcacattagacaaagtgccactgg 285  Q
    ||||||| |||| ||||| ||||||    
T  14367753 ttcacatgagacgaagtggcactgg 14367777  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 643 - 705
Target Start/End: Original strand, 14368274 - 14368336
Alignment:
Q  643 agaacaatattaaagctcaaattgggagaggtatctaacatgcatatgaatcgtctctttcat 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14368274 agaacaatattaaagctcaaattgggagaggtatctaacatgcatatgaatcgtctctttcat 14368336  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 14367550 - 14367597
Alignment:
Q  57 catatcaaaccaactcgttcttcatcaattcagtttgaaattcatgag 104  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||    
T  14367550 catatcaaaccaacatgttcttcatcaatttagtttgaaattcatgag 14367597  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 14367864 - 14367921
Alignment:
Q  336 aaaatttggtttgttgattttggttttgcagaggtctttacttttctcttttaaattat 394  Q
    |||| |||||||||||||||| |||||| |||| || ||||||||||||||||||||||    
T  14367864 aaaaattggtttgttgattttagttttggagagatc-ttacttttctcttttaaattat 14367921  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 536
Target Start/End: Original strand, 1977579 - 1977742
Alignment:
Q  371 ctttacttttctcttttaaattatgtacgctatgaaatgctttttaaaatcaattaagtgtgatcaaaggattatacaatcatttatcatgttctttgaa 470  Q
    |||||||||||||| |||||||||||   |||| | ||| |||||||||||||||| || ||||  ||| ||||||  ||| |||||||||||||||| |    
T  1977579 ctttacttttctctattaaattatgtttactataagatg-tttttaaaatcaattaggtttgattgaagtattatatgatcctttatcatgttctttg-a 1977676  T
Q  471 aacaattaaaaatatcaaatatattttaaaatatagccttagtcctccaaaatcccctcccaaaca 536  Q
    |    ||  ||||| |||||||||||||| |||| | ||||| ||||||||| || ||||||||||    
T  1977677 attttttttaaataacaaatatattttaacatattgtcttagccctccaaaaacctctcccaaaca 1977742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 25627770 - 25627827
Alignment:
Q  373 ttacttttctcttttaaattatgtacgctatgaaatgctttttaaaatcaattaagtg 430  Q
    |||| |||||||||||||||||| |  |||| ||||| ||||||||||||||||||||    
T  25627770 ttacctttctcttttaaattatgaatactataaaatgatttttaaaatcaattaagtg 25627827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 544
Target Start/End: Original strand, 38903598 - 38903663
Alignment:
Q  479 aaaatatcaaatatattttaaaatatagccttagtcctccaaaatcccctcccaaacagaccctta 544  Q
    ||||||||| |||| ||| |||| |||| ||||||||||||||   |||||||||||| |||||||    
T  38903598 aaaatatcagatatttttaaaaacataggcttagtcctccaaacctccctcccaaacaaaccctta 38903663  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 476 - 545
Target Start/End: Original strand, 11842460 - 11842529
Alignment:
Q  476 ttaaaaatatcaaatatattttaaaatatagccttagtcctccaaaatcccctcccaaacagacccttag 545  Q
    |||||||||||||  |||||| ||||||||| ||||  ||||||||||||||||||||||||| ||||||    
T  11842460 ttaaaaatatcaataatatttcaaaatatagacttaaccctccaaaatcccctcccaaacagaaccttag 11842529  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 463
Target Start/End: Original strand, 47694401 - 47694487
Alignment:
Q  377 ttttctcttttaaattatgtacgctatgaaatgctttttaaaatcaattaagtgtgatcaaaggattatacaatcatttatcatgtt 463  Q
    ||||||||||||||||| | || |||||||||||||| |||||||||| ||||| | |  ||| ||||||  |||||||||||||||    
T  47694401 ttttctcttttaaattacggacactatgaaatgctttctaaaatcaatcaagtgcggttgaagtattatatgatcatttatcatgtt 47694487  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 545
Target Start/End: Complemental strand, 4694299 - 4694232
Alignment:
Q  479 aaaatatcaaatatattttaaaatatagccttagtcctccaaaatcc-cctcccaaacagacccttag 545  Q
    |||||||||||||||| || |||||||| ||||| ||||||||||||  ||| |||||| ||||||||    
T  4694299 aaaatatcaaatatatattgaaatatagacttagccctccaaaatccaactcacaaacacacccttag 4694232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 467
Target Start/End: Complemental strand, 18516667 - 18516573
Alignment:
Q  373 ttacttttctcttttaaattatgtacgctatgaaatgctttttaaaa-tcaattaagtgtgatcaaaggattatacaatcatttatcatgttcttt 467  Q
    |||||||||| |||||||||||| || |||| ||||| |||| |||| | |||||||||||||  ||| |||||   |||||||||||||||||||    
T  18516667 ttacttttct-ttttaaattatgaacactataaaatgtttttaaaaaatgaattaagtgtgattgaagcattatgtgatcatttatcatgttcttt 18516573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 522
Target Start/End: Original strand, 55029705 - 55029747
Alignment:
Q  480 aaatatcaaatatattttaaaatatagccttagtcctccaaaa 522  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||    
T  55029705 aaatatcaaatgtatattaaaatatagacttagtcctccaaaa 55029747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 545
Target Start/End: Complemental strand, 25846074 - 25846009
Alignment:
Q  480 aaatatcaaatatattttaaaatatagccttagtcctccaaaatcccctcccaaacagacccttag 545  Q
    |||||| |||||||||||||||||||| ||||| ||||||||| ||||| ||||| ||||||||||    
T  25846074 aaatatgaaatatattttaaaatatagacttagccctccaaaacccccttccaaatagacccttag 25846009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 455
Target Start/End: Complemental strand, 21662405 - 21662323
Alignment:
Q  373 ttacttttctcttttaaattatgtacgctatgaaatgctttttaaaatcaattaagtgtgatcaaaggattatacaatcattt 455  Q
    |||||||||||||||||| |||  || || | ||||| ||||||||||||||||||| ||||  ||| ||||||  |||||||    
T  21662405 ttacttttctcttttaaagtatagacactgtaaaatgttttttaaaatcaattaagtttgattgaagtattatatgatcattt 21662323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 463
Target Start/End: Original strand, 27739099 - 27739189
Alignment:
Q  373 ttacttttctcttttaaattatgtacgctatgaaatgctttttaaaatcaattaagtgtgatcaaaggattatacaatcatttatcatgtt 463  Q
    ||||||||||||||||||||||  |  |||| ||||| ||||||||||||||||||||||||  ||| |||  |  |||||||||||||||    
T  27739099 ttacttttctcttttaaattataaatactataaaatgttttttaaaatcaattaagtgtgattgaagtatttaatgatcatttatcatgtt 27739189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 522
Target Start/End: Original strand, 11045485 - 11045528
Alignment:
Q  479 aaaatatcaaatatattttaaaatatagccttagtcctccaaaa 522  Q
    |||||||||||||||| | ||||||||| |||||||||||||||    
T  11045485 aaaatatcaaatatatatcaaaatatagacttagtcctccaaaa 11045528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 525
Target Start/End: Original strand, 49065613 - 49065660
Alignment:
Q  478 aaaaatatcaaatatattttaaaatatagccttagtcctccaaaatcc 525  Q
    ||||| |||||||||||||||||||||||  ||||||||| |||||||    
T  49065613 aaaaaaatcaaatatattttaaaatatagaattagtcctctaaaatcc 49065660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 522
Target Start/End: Complemental strand, 44996627 - 44996585
Alignment:
Q  480 aaatatcaaatatattttaaaatatagccttagtcctccaaaa 522  Q
    |||| |||||||||||||||||||||| |||| ||||||||||    
T  44996627 aaatttcaaatatattttaaaatatagacttaatcctccaaaa 44996585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 51303769 - 51303711
Alignment:
Q  376 cttttctcttttaaattatgtacgctatgaaatgctttttaaaatcaattaagtgtgat 434  Q
    ||||||| ||| |||||||| || |||| ||||| ||||| ||||||||||||||||||    
T  51303769 cttttctttttaaaattatgaacactataaaatgtttttttaaatcaattaagtgtgat 51303711  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 13803870 - 13803923
Alignment:
Q  414 ttaaaatcaattaagtgtgatcaaaggattatacaatcatttatcatgttcttt 467  Q
    |||| ||||||| |||||||| |||| ||||||||||||||||| || ||||||    
T  13803870 ttaagatcaattgagtgtgataaaagtattatacaatcatttataattttcttt 13803923  T

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