View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12873_high_21 (Length: 320)
Name: NF12873_high_21
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12873_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 65 - 311
Target Start/End: Complemental strand, 43995254 - 43995015
Alignment:
| Q |
65 |
cgctatctatctctctactagtactgtttagtgttagctctttctctctctgttaagatatacagaagaaaacaaaacaaaacgcagtgaagaagaaaac |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
43995254 |
cgctatctatctctctactagtactgtttagtgttagatctttctctctctgttcagatatacag-----aataaaacaaaacgcagtgaagaagaaaac |
43995160 |
T |
|
| Q |
165 |
gtacacacgtcacactcagatctctccttctttaatactacaacaacactttcacttccattaatggcttcttgaccaggtatcaactcttcttcttttt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43995159 |
gtacacacgtcacactcagatctctccttctttaatactacaacaacactttcacttccattaatggcttcttgaccaggtatcaactcttcttcttttt |
43995060 |
T |
|
| Q |
265 |
catttctctcgactcaatttcactttaactcatgttcttgttcattt |
311 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
43995059 |
catttcttt--gctcaatttcactttaactcatgttcttgtttattt |
43995015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University