View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12873_high_22 (Length: 304)
Name: NF12873_high_22
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12873_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 26463865 - 26464148
Alignment:
| Q |
1 |
gagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatccaaaatagtcggtgtttgccaagaaagaattggaatcaaca |
100 |
Q |
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| T |
26463865 |
gagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatctaaaatagtcagtgtttgccaagaaagaattggaatcaaca |
26463964 |
T |
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| Q |
101 |
aaatagatgcacaataaacttttctagattatagggtatgcatgtccaaaacaatcgatatgttgttgacaataacagctaccaaattacagaataagac |
200 |
Q |
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| T |
26463965 |
aaatagatgcacaataaacttttctagattccagggcatgcatgtccaaaacaatccatatgttgtcgacaataacagctaccaaattacagaacaagac |
26464064 |
T |
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| Q |
201 |
aagacaattttcaaaatttcccttaagtttggaaatcaaccttttcaatggttctagatatctacaatctgttcccttcctcac |
284 |
Q |
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| T |
26464065 |
aagacaattttcaaaatttcccttaattttggaaatcaaccttttcaatggttctagatatctacaatctgttcccttcctcac |
26464148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 14368299 - 14368583
Alignment:
| Q |
1 |
gagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatccaaaatagtcggtgtttgccaagaaagaattggaatcaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
14368299 |
gagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatccaaaatagtcactgtttgccaagaaagaattgtaatcaaca |
14368398 |
T |
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| Q |
101 |
aaatagatgcacaataaacttttctagattatagggtatgcatgtccaaaacaatcgatatgttgttgacaataacagctaccaaattacagaataagac |
200 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||| |
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| T |
14368399 |
aaatagatgcacaataaacttttctagattaaagggcatgcatgtccaaaacaatccatatgttgtcgacaataacagctaccaaattacacaacaagac |
14368498 |
T |
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| Q |
201 |
aagacaattttcaaaatttccctt-aagtttggaaatcaaccttttcaatggttctagatatctacaatctgttcccttcctcac |
284 |
Q |
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|||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14368499 |
aagacaattttcaaaaattcccttaaagtttggtaatcaaccttttcaatggttctagatatctacaatttgttcccttcctcac |
14368583 |
T |
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