View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12873_high_3 (Length: 713)
Name: NF12873_high_3
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12873_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 32 - 690
Target Start/End: Original strand, 22270457 - 22271111
Alignment:
| Q |
32 |
tttttatatatcggcttttctcgagagatatgtcactgtgcttgtcgcgacattaacgtgtaggaggaaatttt-tatgcctctcgcaaaaaggaccatg |
130 |
Q |
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|||||||||||||| |||||||| ||||||||||| ||||||||||||||| | ||| || ||||||||||||| |||||||||||| |||||||| ||| |
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| T |
22270457 |
tttttatatatcggtttttctcgggagatatgtcattgtgcttgtcgcgacttcaacatgcaggaggaaattttctatgcctctcgcgaaaaggactatg |
22270556 |
T |
|
| Q |
131 |
actacttcctcctccgtatgagtctagtcttgtggaggagattctccacgatgagcaggagaaagatatttgtggtatggattctgatttccgatttctc |
230 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||| |
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| T |
22270557 |
actacttcctcctccgtct-----aagtcttgtggaggagattctccacgatgagaaggagaaagacatttctggcatggattctgatttccgatttctc |
22270651 |
T |
|
| Q |
231 |
ggaggcagcatccgctgccacatttatttaagtagcggtttgttgattttggtgagcgacctcgatttgagtcgggattgtagtaggaattttatcttga |
330 |
Q |
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|||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||||||||| |||||| |
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| T |
22270652 |
agaggtagcatccgctgctacatttatttgagtagcggtttgttgattttggcgagcgacctcgatttgagttggtattgtggtaggaattttttcttga |
22270751 |
T |
|
| Q |
331 |
ttttcttctactcaggagagactcacattttgttgttggagtaggttgacaatgtttgtgatgtttgcaagaacatcgttcagataagtgacgctgaact |
430 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |
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| T |
22270752 |
ttttcttctactcaggagagactcacattttgttgctggagtaagttgacaatgtttgtgatgtttgcaagaacatcattcaaataagtgacgtcgaact |
22270851 |
T |
|
| Q |
431 |
gtgctactgagagttgaaaaaatcgcacttggtgattttggtcttgctcgttctgatggacgaaagacggttggaattatggaggattgttgaagcttga |
530 |
Q |
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| T |
22270852 |
gtgctactgagagttgaaagaatcgcacttggtgattttggtcttgctcgttctgattaacgaaaggcggttggaattatggaggattgttgaagcttga |
22270951 |
T |
|
| Q |
531 |
ggaatctcttgattcccttgaactagagtaacctcccctttaggagttggaggaagaacggtggtgttgtgatttctactaagtggagtgatagtgattt |
630 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |
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| T |
22270952 |
ggaatctcttgattcccttgaactagagtaacctcccctttaggagttggaggaagaacggtggtgttatgatttctactaaggggagtgataatgattt |
22271051 |
T |
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| Q |
631 |
tagtaaaattggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaattgtct |
690 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
22271052 |
tagtgaaattggcaagtgcatcaaatcgtgcaaagtaataaggtagtaagttaatcgtct |
22271111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 18494564 - 18494626
Alignment:
| Q |
636 |
aaattggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaattg-tctccacagg |
697 |
Q |
| |
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||||||||||||||| |||||||| |||||| ||||||||||||| |||| |||||||||| |
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| T |
18494564 |
aaattggcaagtgcaccaaatcgtaacaagtaataaggtagtaagtttattgttctccacagg |
18494626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 248 - 391
Target Start/End: Complemental strand, 31111916 - 31111773
Alignment:
| Q |
248 |
ccacatttatttaagtagcggtttgttgattttggtgagcgacctcgatttgagtcgggattgtagtaggaattttatcttgattttcttctactcagga |
347 |
Q |
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||||||| ||| ||| ||||||||||||||| | ||| |||||| |||| |||| ||| || || |||||||| |||||||||||||||| | |
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| T |
31111916 |
ccacattcattggagtggcggtttgttgatttcgttgaacgaccttaatttaagtcacatttgcagcagaaattttatattgattttcttctacttgagt |
31111817 |
T |
|
| Q |
348 |
gagactcacattttgttgttggagtaggttgacaatgtttgtga |
391 |
Q |
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| T |
31111816 |
gagacacgcattctattgttggagtaggttgacaatgtttgtga |
31111773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 697
Target Start/End: Original strand, 14921131 - 14921207
Alignment:
| Q |
621 |
atagtgattttagtaaaattggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaattgtctccacagg |
697 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||| |||| ||| || ||| | ||||||| |||||| |||| |
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| T |
14921131 |
atagtgattttagataaattggtaagtgcatcaaatcgtacaaaataataaagtaatgagttaatcgtctcctcagg |
14921207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 617 - 659
Target Start/End: Complemental strand, 22512053 - 22512011
Alignment:
| Q |
617 |
agtgatagtgattttagtaaaattggcaagtgcatcaaatcgt |
659 |
Q |
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|||||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
22512053 |
agtgatggtgattttagtgaaattggcaagtgcaccaaatcgt |
22512011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 639 - 685
Target Start/End: Original strand, 33083616 - 33083662
Alignment:
| Q |
639 |
ttggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaat |
685 |
Q |
| |
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||||||||||||||||||||| |||||||| | ||||||||||||| |
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| T |
33083616 |
ttggcaagtgcatcaaatcgtacaaagtaatagagtagtaagttaat |
33083662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 6177955 - 6177894
Alignment:
| Q |
636 |
aaattggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaattgtctccacagg |
697 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||| |||||||||| |||||| |||||| |
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| T |
6177955 |
aaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttttttgtcttcacagg |
6177894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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