View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12873_high_4 (Length: 637)
Name: NF12873_high_4
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12873_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 29 - 627
Target Start/End: Original strand, 42239106 - 42239712
Alignment:
| Q |
29 |
cacaactatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaa |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239106 |
cacaactatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaa |
42239205 |
T |
|
| Q |
129 |
aactcacagcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatcaa |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
42239206 |
aactcacagcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggattcaattttgatcacgatcaatttcatcaaattccattatcaa |
42239305 |
T |
|
| Q |
229 |
aaggtccaatttcttaatatttgtgttattaacatttcttttgttaggtgtaaatatttgcacacatgatggcagtgcacagtggcggagccattcattg |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239306 |
aaggtccaatttcttaatatttgtgttattaacatttcttttgttaggtgtaaatatttgcacacatgatggcagtgcacagtggcggagccattcattg |
42239405 |
T |
|
| Q |
329 |
gcttggatgggccgtggcccacccaaaccctnnnnnnntcatttctaatttgtaggaacaatcagagtttggaatgaaggaa--------gtttacacca |
420 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |
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| T |
42239406 |
gcttggatgggccgtggcccacccaaaccct-aaaaaatcatttctaatttgttggaacaatcagagtttggattgaaggaatctaaattgtttacacca |
42239504 |
T |
|
| Q |
421 |
ccctcttcatcctaccaaaactactttgttcgcactaaaacatatatgtaccaaacatagacagttagcatgcagtatctcattgatcatttacaacaat |
520 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
42239505 |
ccttcttcatcctaccaaaactactttgttcgcactaaaacatatatgtaccaaacat-----gttagcatgcaatatctcattgatcatttacaacaaa |
42239599 |
T |
|
| Q |
521 |
agttgagaaggaaaacaatttatttcacttact------taatgctctattgcgtgccaattgcaccaattacttgaaaactctcttgtattgtagatgc |
614 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42239600 |
agttgagaaggaaaacaatttatttcacttacttgaatataatgctctattgcgcgccaattgcaccaattacttgaacactctcttgtattgtagatgc |
42239699 |
T |
|
| Q |
615 |
acacaggttctgc |
627 |
Q |
| |
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||||||||||||| |
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| T |
42239700 |
acacaggttctgc |
42239712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 45 - 285
Target Start/End: Original strand, 17649719 - 17649959
Alignment:
| Q |
45 |
gactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggaga |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
17649719 |
gactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagaaaaactca---caggaga |
17649815 |
T |
|
| Q |
145 |
tgtgtctcatacaaaaacaacaatttctgggcgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatc-aaaaggtccaa---ttt |
240 |
Q |
| |
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||||||||||| |||||||||| || |||||||||||||||| || | ||| |||||||||||| |||| |||||||||| ||||||||||| ||| |
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| T |
17649816 |
tgtgtctcataggaaaacaacaaattgtgggcgaaaaaggattgaa-ctggatcatgatcaatttcgtcaagttccattatcaaaaaggtccaatttttt |
17649914 |
T |
|
| Q |
241 |
cttaatatttgtgttattaacatttcttttgttaggtgtaaatat |
285 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17649915 |
tttaatatttgtgttattaacatttattttgttaggtgtaaatat |
17649959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 29 - 238
Target Start/End: Original strand, 1328504 - 1328710
Alignment:
| Q |
29 |
cacaactatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaa |
128 |
Q |
| |
|
|||||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
1328504 |
cacaaccatgtaggaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagcaa |
1328603 |
T |
|
| Q |
129 |
aactcacagcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatc-a |
227 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||| || |||||||||||||||| || | ||| |||||||||||| |||| |||||||||| | |
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| T |
1328604 |
aactca---caggagatgtgtctcataggaaaacaacaaattgtgggcgaaaaaggattgaa-ctggatcatgatcaatttcttcaagttccattatcaa |
1328699 |
T |
|
| Q |
228 |
aaaggtccaat |
238 |
Q |
| |
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||||||||||| |
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| T |
1328700 |
aaaggtccaat |
1328710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 42541040 - 42540845
Alignment:
| Q |
40 |
aggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagca |
139 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
42541040 |
aggaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagcaaaactca---ca |
42540944 |
T |
|
| Q |
140 |
ggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatc-aaaaggtccaat |
238 |
Q |
| |
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|||||||||||||||| |||||||||| || |||||||||||||||| || | ||| |||||||||||| |||| |||||||||| |||||||||||| |
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| T |
42540943 |
ggagatgtgtctcataggaaaacaacaaattgtgggcgaaaaaggattgaa-ctggatcatgatcaatttcttcaagttccattatcaaaaaggtccaat |
42540845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 4745900 - 4745952
Alignment:
| Q |
40 |
aggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtct |
92 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
4745900 |
aggaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtct |
4745952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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