View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12873_high_5 (Length: 606)

Name: NF12873_high_5
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12873_high_5
NF12873_high_5
[»] chr3 (17 HSPs)
chr3 (175-454)||(8431406-8431686)
chr3 (28-133)||(48531600-48531706)
chr3 (175-318)||(43073034-43073178)
chr3 (175-321)||(31525360-31525507)
chr3 (175-312)||(28934724-28934861)
chr3 (181-318)||(10454279-10454422)
chr3 (191-327)||(44656229-44656369)
chr3 (199-318)||(47820897-47821022)
chr3 (181-318)||(9358743-9358883)
chr3 (175-312)||(52076066-52076209)
chr3 (31-90)||(48528882-48528941)
chr3 (195-318)||(53349401-53349527)
chr3 (175-312)||(20701152-20701292)
chr3 (188-312)||(28956952-28957079)
chr3 (181-312)||(42881885-42882019)
chr3 (199-318)||(46750212-46750333)
chr3 (259-318)||(55166895-55166955)
[»] chr1 (14 HSPs)
chr1 (191-396)||(31833817-31834019)
chr1 (176-321)||(12172951-12173097)
chr1 (175-406)||(19472716-19472944)
chr1 (200-318)||(46757306-46757425)
chr1 (181-318)||(26990601-26990739)
chr1 (175-312)||(8462958-8463097)
chr1 (199-318)||(42442019-42442142)
chr1 (181-318)||(47028931-47029072)
chr1 (175-318)||(38548673-38548821)
chr1 (193-312)||(41955891-41956016)
chr1 (228-318)||(43268645-43268739)
chr1 (181-318)||(26384960-26385100)
chr1 (175-312)||(28447722-28447863)
chr1 (176-317)||(43460698-43460848)
[»] chr7 (14 HSPs)
chr7 (181-318)||(46691839-46691981)
chr7 (175-312)||(30655586-30655727)
chr7 (175-312)||(22197675-22197816)
chr7 (175-312)||(22240005-22240146)
chr7 (192-312)||(36615808-36615927)
chr7 (176-321)||(31424761-31424912)
chr7 (175-312)||(1039051-1039191)
chr7 (199-312)||(49035865-49035983)
chr7 (193-315)||(41702867-41702992)
chr7 (203-312)||(33320710-33320817)
chr7 (352-406)||(30655761-30655815)
chr7 (181-321)||(32678937-32679083)
chr7 (175-252)||(42598053-42598130)
chr7 (181-318)||(43397640-43397781)
[»] chr2 (6 HSPs)
chr2 (188-324)||(38908663-38908800)
chr2 (191-318)||(41419617-41419748)
chr2 (181-318)||(14732334-14732473)
chr2 (200-318)||(41378216-41378332)
chr2 (175-312)||(22649053-22649193)
chr2 (199-252)||(43356750-43356803)
[»] chr8 (14 HSPs)
chr8 (175-318)||(40930818-40930961)
chr8 (175-311)||(13959207-13959347)
chr8 (179-318)||(24200614-24200753)
chr8 (181-318)||(25829259-25829399)
chr8 (174-318)||(5200469-5200615)
chr8 (182-318)||(22839250-22839391)
chr8 (175-318)||(38086402-38086551)
chr8 (245-312)||(10124866-10124935)
chr8 (175-318)||(30836116-30836272)
chr8 (175-224)||(7845135-7845184)
chr8 (176-252)||(44362918-44362994)
chr8 (88-149)||(38542725-38542786)
chr8 (175-239)||(584123-584187)
chr8 (259-318)||(7845080-7845138)
[»] chr4 (11 HSPs)
chr4 (191-312)||(16572074-16572198)
chr4 (176-310)||(47571560-47571694)
chr4 (175-318)||(32183275-32183425)
chr4 (181-277)||(15186975-15187072)
chr4 (88-175)||(5341706-5341793)
chr4 (181-315)||(55133102-55133233)
chr4 (181-318)||(25641263-25641407)
chr4 (181-319)||(16662301-16662441)
chr4 (181-317)||(42390766-42390906)
chr4 (115-175)||(25222218-25222278)
chr4 (175-225)||(45511390-45511440)
[»] chr5 (10 HSPs)
chr5 (199-318)||(23172985-23173107)
chr5 (193-318)||(22887211-22887337)
chr5 (175-318)||(9931785-9931935)
chr5 (193-327)||(25539810-25539947)
chr5 (175-312)||(10431063-10431204)
chr5 (192-312)||(819134-819254)
chr5 (176-318)||(3677779-3677924)
chr5 (175-303)||(42241577-42241708)
chr5 (260-312)||(2292168-2292222)
chr5 (175-233)||(9597742-9597800)
[»] chr6 (8 HSPs)
chr6 (175-312)||(33112703-33112844)
chr6 (181-318)||(10246910-10247049)
chr6 (174-406)||(11546685-11546912)
chr6 (184-319)||(6575720-6575860)
chr6 (176-318)||(15859093-15859244)
chr6 (175-406)||(34761080-34761306)
chr6 (259-318)||(33984753-33984814)
chr6 (190-233)||(12754422-12754465)
[»] scaffold0209 (1 HSPs)
scaffold0209 (175-239)||(12883-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (177-233)||(7956-8012)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 175 - 454
Target Start/End: Original strand, 8431406 - 8431686
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 274  Q
    ||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8431406 tttttttttttgaaacggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 8431505  T
Q  275 gccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggac-acaaaaataatgacgcagacatatacaaa 373  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| |||||||||||||||||||||    
T  8431506 gcaacaaaacaccggctcgaacaaaaaccccttaaaaaccaccccaacactaaggcactaactaccggtcaaaaaaaaaaatgacgcagacatatacaaa 8431605  T
Q  374 tgacaatccgcaagcatacccctgcatcaacactcataacagccaaaactgcagcaccacaccaaaaagacagcagcaacc 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8431606 tgacaatccgcaagcatacccctgcatcaacactcataacagccaaaactacagcaccacaccaaaaagacagcagcaacc 8431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 48531706 - 48531600
Alignment:
Q  28 aacctgttcacctatcacgtcttgtttgcaagagcgtt-gtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtgg 126  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48531706 aacctgttcacctatcacgtcttgtttgcaagagcatttgtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtgg 48531607  T
Q  127 tgttggt 133  Q
    |||||||    
T  48531606 tgttggt 48531600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 175 - 318
Target Start/End: Original strand, 43073034 - 43073178
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata-aacacaaggggaaatcggt 273  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || ||||||||| | || ||||||||||||||||    
T  43073034 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaaaaagaatacaaggggaaatcggt 43073133  T
Q  274 tgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    ||||  |||||||||||||||||||||||||||||||||||||||    
T  43073134 tgccttaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 175 - 321
Target Start/End: Complemental strand, 31525507 - 31525360
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 274  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| ||||||| ||||| || ||||||||| | | |||||||||||||||||    
T  31525507 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggtt 31525408  T
Q  275 gccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 321  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  31525407 gccacacaaacaacggctcgaacaaaaaccccttaaaaaccaccctaa 31525360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 28934724 - 28934861
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggt 273  Q
    ||||| ||||||||   |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| |||||  || ||||||||||||||||    
T  28934724 tttttttttttgaattagcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaacaaaacaaggggaaatcggt 28934823  T
Q  274 tgccacaaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  28934824 tgccac-aaacaccggctcgaacaaaaaccccttaaaaa 28934861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 10454422 - 10454279
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-----aaaaaataaacacaaggggaaatcggttg 275  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||  ||||||| |||||||| |||     |||||||| | ||||||||||||||||||    
T  10454422 tttttgaaatggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgggaaaaaaaaaatacatacaaggggaaatcggttg 10454323  T
Q  276 ccacaa-aacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    |||||| ||  ||||||| |||||||||||||||||||||||||    
T  10454322 ccacaagaaagccggctcaaacaaaaaccccttaaaaaccaccc 10454279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 191 - 327
Target Start/End: Original strand, 44656229 - 44656369
Alignment:
Q  191 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaac---acaaggggaaatcggttgccacaaaacac 286  Q
    ||||||| |||||||||||| ||||||||||||||||||| || |||||||| |||| ||||| ||||   ||||||| ||||||||||||| | |||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggagaaaaaaaaaccatacaagggaaaatcggttgccatataacac 44656328  T
Q  287 cggctcgaacaaaaaccccttaaaaaccaccctaacactaa 327  Q
     | |||||||||||| ||||||||||||||||||| |||||    
T  44656329 agactcgaacaaaaatcccttaaaaaccaccctaaaactaa 44656369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 199 - 318
Target Start/End: Complemental strand, 47821022 - 47820897
Alignment:
Q  199 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcg 293  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||    |||||||| | | |||||||||||||||||| || |||||||||||||    
T  47821022 attattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccggctcg 47820923  T
Q  294 aacaaaaacccc-ttaaaaaccaccc 318  Q
    |||||||||||| |||||||||||||    
T  47820922 aacaaaaacccctttaaaaaccaccc 47820897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 9358743 - 9358883
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-acacaaggggaaatcggttgccac 279  Q
    |||||||| |||||||| ||||||| |||| |||||||||| ||| | ||||| ||||| || |||| |||| || | | |||||||||||||||||| |    
T  9358743 tttttgaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaacatagaaggggaaatcggttgccgc 9358842  T
Q  280 a-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 318  Q
    | ||||||||||||||||||||||||| |||||||||||||    
T  9358843 acaaacaccggctcgaacaaaaacccctttaaaaaccaccc 9358883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 52076209 - 52076066
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga------aaaaataaacacaaggggaaa 268  Q
    ||||| |||||||| |||||||| |||| ||||||| |||||||||| ||| ||||||| |||||||| ||||      ||||||| | |||||||| ||    
T  52076209 tttttttttttgaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtggagaaaaaaaaaatacaaacaaggggtaa 52076110  T
Q  269 tcggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    |||||||||| ||||||   ||||||||||||||||||||||||    
T  52076109 tcggttgccataaaacaaacgctcgaacaaaaaccccttaaaaa 52076066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 48528941 - 48528882
Alignment:
Q  31 ctgttcacctatcacgtcttgtttgcaagagcgttgtatttatgagatatgagaagctaa 90  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48528941 ctgttcacctatcacgtcttgtttgcaagagcattgtatttatgagatatgagaagctaa 48528882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 195 - 318
Target Start/End: Complemental strand, 53349527 - 53349401
Alignment:
Q  195 aaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca--caaggggaaatcggttgccaca-aaacaccggct 291  Q
    |||||||||||||||| |||| | ||||||| ||||||| || || || ||| |||| ||||||  |||||| |||||||||||| || |||||||||||    
T  53349527 aaaaattattaaccaacaagctcatgcaagaagcactaataaacttgggtgggaaaattaaacatacaagggaaaatcggttgccgcacaaacaccggct 53349428  T
Q  292 cgaacaaaaaccccttaaaaaccaccc 318  Q
    | |||||||||||||||||||||||||    
T  53349427 caaacaaaaaccccttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 20701292 - 20701152
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga---aaaaataaacacaaggggaaatcg 271  Q
    ||||| ||||| || | |||||| ||||||||||||  ||||||| ||||| ||||||| |||||||| || |   ||||||| | ||||||||||||||    
T  20701292 tttttttttttaaatcagcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcg 20701193  T
Q  272 gttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
     |||||||| |||  ||||||||||||||||||||||||||    
T  20701192 attgccacacaactacggctcgaacaaaaaccccttaaaaa 20701152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 312
Target Start/End: Complemental strand, 28957079 - 28956952
Alignment:
Q  188 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacaca--aggggaaatcggttgccaca-aaac 284  Q
    |||| ||||| |||||||||||| ||| ||||||||||  |||| | |||||||| ||  ||||| ||||| |  |||||||||||||||||||| ||||    
T  28957079 aacgacaaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaac 28956980  T
Q  285 accggctcgaacaaaaaccccttaaaaa 312  Q
    ||||||||||||||||||||||| ||||    
T  28956979 accggctcgaacaaaaacccctttaaaa 28956952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 181 - 312
Target Start/End: Complemental strand, 42882019 - 42881885
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca----caaggggaaatcggttgc 276  Q
    ||||| || |||||||| ||||||| |||| |||| ||| ||||||||||||| ||||||||  |||||||| | |||    ||||||||||||| ||||    
T  42882019 tttttaaatcggcaaaatattatta-ccaacaagctcgtacaagatgcactaaaaagctcgggaggaaaaaaaacacaaatacaaggggaaatcgattgc 42881921  T
Q  277 cacaaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    ||||| |||||||||| ||||||||| |||||||||    
T  42881920 cacaatacaccggctcaaacaaaaacgccttaaaaa 42881885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 318
Target Start/End: Complemental strand, 46750333 - 46750212
Alignment:
Q  199 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatg---gaaaaaataaacacaaggggaaatcggttgccacaaaacaccggctcgaa 295  Q
    |||||||||||| ||  | || ||||||||||||| |||||||| ||   ||||||  ||| |||| || |||||||||||| ||||||||||| |||||    
T  46750333 attattaaccaacaaatctgtacaagatgcactaataagctcgggtgaaagaaaaagaaaatacaaaggaaaatcggttgccgcaaaacaccggttcgaa 46750234  T
Q  296 caaaaaccccttaaaaaccaccc 318  Q
    |||||| ||||||||||||||||    
T  46750233 caaaaa-cccttaaaaaccaccc 46750212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 55166895 - 55166955
Alignment:
Q  259 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    ||||||||||||||||||| || ||||   |||||||||||||||||||||||||||||||    
T  55166895 caaggggaaatcggttgccgcacaaactttggctcgaacaaaaaccccttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 191 - 396
Target Start/End: Complemental strand, 31834019 - 31833817
Alignment:
Q  191 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaaaacaccggc 290  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||||||||| || ||||||   | ||||||| ||||||||||||||| |||||||||    
T  31834019 ggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtgaaaaaaa---atacaagggaaaatcggttgccacataacaccggc 31833923  T
Q  291 tcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatacaaatgacaatccgcaagcat 390  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  31833922 tcgaacaaaaaccccttaaaaaccaccccaacactaaggcacaaactaccagtcacaaaagtaatgacgcagacatatacaaatggcaatccgcaagcat 31833823  T
Q  391 acccct 396  Q
    ||||||    
T  31833822 acccct 31833817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 176 - 321
Target Start/End: Complemental strand, 12173097 - 12172951
Alignment:
Q  176 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttg 275  Q
    |||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || ||||||||| | | ||||||||||||||||||    
T  12173097 ttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggttg 12172998  T
Q  276 ccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 321  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||    
T  12172997 ccacacaaacatcagctcgaacaaaaaccccttaaaaaccaccctaa 12172951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 175 - 406
Target Start/End: Complemental strand, 19472944 - 19472716
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg--gaaaaaataaacacaaggggaaatcgg 272  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||  ||||||||| | | ||||||||||| |    
T  19472944 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcag 19472845  T
Q  273 ttgccaca-aaacaccggctcgaacaaaaa-ccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatac 370  Q
    |||||| | |||| |||||||||||||||| ||| |||||||||||||  | ||||||| ||  ||       ||||| | ||||||||||| |||||||    
T  19472844 ttgccatacaaactccggctcgaacaaaaatccctttaaaaaccacccataaactaaggaacacac-------cacaagagtaatgacgcaggcatatac 19472752  T
Q  371 aaatgacaatccgcaagcatacccctgcatcaacac 406  Q
    || |||||  || |||||||||||||||||||||||    
T  19472751 aagtgacagaccacaagcatacccctgcatcaacac 19472716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 200 - 318
Target Start/End: Complemental strand, 46757425 - 46757306
Alignment:
Q  200 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaa-aacaccggctcgaacaa 298  Q
    ||||||||||| |||||||||||||||||||||| |||||| | |||||||||  || | |||||||||||| ||||||||| |||||| ||||||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtggaaaaaaacaatataaggggaaatcgattgccacaataacaccagctcgaacaa 46757326  T
Q  299 aaaccccttaaaaaccaccc 318  Q
    |||||| |||||||||||||    
T  46757325 aaaccctttaaaaaccaccc 46757306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 26990739 - 26990601
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 280  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || ||||||||| | | ||||||| |||||| ||||| ||    
T  26990739 tttttgaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaagggaaaatcgattgccgca 26990640  T
Q  281 -aaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
     || ||||||||| |||||||| ||||||||||||||||    
T  26990639 caagcaccggctcaaacaaaaatcccttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 8462958 - 8463097
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg--gaaaaaataaacacaaggggaaatcgg 272  Q
    ||||| ||||||||| || |||| |||||||||||| |||| ||||||||| |||||||  ||||||| ||  ||||||||| | ||||||| |||||||    
T  8462958 tttttttttttgaaatgg-aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcgg 8463056  T
Q  273 ttgccac-aaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    ||||||| |||||  ||||||||||||||||||||||||||    
T  8463057 ttgccacaaaaacgtcggctcgaacaaaaaccccttaaaaa 8463097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 199 - 318
Target Start/End: Original strand, 42442019 - 42442142
Alignment:
Q  199 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcggttgccac-aaaacaccggctcga 294  Q
    |||||||||||| ||| |||||||||| ||||||| |||||||| || |||||| ||   | |||| ||||||||||||||||  ||||||||| |||||    
T  42442019 attattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaacaccgactcga 42442118  T
Q  295 acaaaaaccccttaaaaaccaccc 318  Q
    ||||||||||||||||||||||||    
T  42442119 acaaaaaccccttaaaaaccaccc 42442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 47029072 - 47028931
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa-----taaacacaaggggaaatcggttg 275  Q
    ||||||||||||| ||| ||||  |||||| |||  ||||||||| ||| ||| |||||||| |||||||||     |||| ||||||||||||||||||    
T  47029072 tttttgaaacggccaaatatta--aaccaacaagttcgtgcaagacgcattaataagctcgggtggaaaaaaaaacataaatacaaggggaaatcggttg 47028975  T
Q  276 ccacaaaa-caccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    || ||||| |||||||||||||||||||||||||||||| ||||    
T  47028974 ccgcaaaaacaccggctcgaacaaaaaccccttaaaaactaccc 47028931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 175 - 318
Target Start/End: Complemental strand, 38548821 - 38548673
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaaca--caaggggaaatc 270  Q
    ||||| |||||||| |||||||| |||||||||||| || ||||||||||| ||||||| |||||||| |||  |||||| |||||  ||||||||||||    
T  38548821 tttttttttttgaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgggaaaaaaaaaaacaagcaaggggaaatc 38548722  T
Q  271 ggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    |||||||| | |||    ||||||||||||  |||||||||||||||||    
T  38548721 ggttgccatacaaaatttggctcgaacaaaccccccttaaaaaccaccc 38548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 41955891 - 41956016
Alignment:
Q  193 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-----acacaaggggaaatcggttgccacaa-aacac 286  Q
    ||||| |||||||||||| ||   |||||||||| |||||| ||||| ||||||| |||| ||     | ||||||||||||||||||||| || |||||    
T  41955891 caaaatattattaaccaacaaattcgtgcaagatacactaataagcttggatggagaaaaaaactaaaatacaaggggaaatcggttgccataataacac 41955990  T
Q  287 cggctcgaacaaaaaccccttaaaaa 312  Q
    ||||||||||||||| ||||||||||    
T  41955991 cggctcgaacaaaaatcccttaaaaa 41956016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 43268645 - 43268739
Alignment:
Q  228 cactaacaagctcggatggaaaaaataaacaca--aggggaaatcggttgccaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 318  Q
    |||||| |||||||| |||| |||| ||||| |  ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  43268645 cactaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 43268739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 26385100 - 26384960
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcggttgcc 277  Q
    |||||||||| | |||| |||||||||| | |||||||| ||||| || |||| ||||| || ||||||||| ||   | |||| ||||||||||||| |    
T  26385100 tttttgaaacagtaaaatattattaaccgacaagcccgt-caagaagcgctaataagcttgggtggaaaaaaaaatacaaacaaagggaaatcggttgtc 26385002  T
Q  278 aca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    | | ||||||| |||| ||||||| |||||||||||||||||    
T  26385001 atacaaacaccagctcaaacaaaacccccttaaaaaccaccc 26384960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 28447863 - 28447722
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcg 271  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||  |||  || |||||| ||   | ||||||| ||||||    
T  28447863 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataaattcgagtgaaaaaaaaaagacaaacaagggaaaatcg 28447764  T
Q  272 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    ||||| | | ||||| | || |||||||||||| ||||||||    
T  28447763 gttgcaatataaacatcagcacgaacaaaaacctcttaaaaa 28447722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 317
Target Start/End: Complemental strand, 43460848 - 43460698
Alignment:
Q  176 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg----gaaaaaataaac--acaaggggaaat 269  Q
    |||| |||||||| || ||||| |||||||||||| ||| | |||| ||| ||||||| |||||  | ||    ||||||| ||||  | ||||||||||    
T  43460848 ttttttttttgaatcgacaaaatattattaaccaacaagtctgtgcgagaagcactaataagctaaggtgaaaagaaaaaaaaaactaagaaggggaaat 43460749  T
Q  270 cggttgcca--caaaacaccggctcgaacaaaaacccctt-aaaaaccacc 317  Q
    ||||||| |  |||||||| | |||||||||||||||||| ||||||||||    
T  43460748 cggttgcgatacaaaacactgactcgaacaaaaaccccttcaaaaaccacc 43460698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 46691839 - 46691981
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgc 276  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||    |||||||| | |||||||||||||||||||    
T  46691839 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgc 46691938  T
Q  277 caca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  46691939 cacataaacaccggctcgaacaaaaaccccttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 30655586 - 30655727
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcgg 272  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||  |||||||| | |||||||||||||||    
T  30655586 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcgg 30655685  T
Q  273 ttgc--cacaaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    ||||  ||||||| | || |||||||||||||| ||||||||    
T  30655686 ttgccacacaaaatatcgactcgaacaaaaacctcttaaaaa 30655727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 22197816 - 22197675
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca-----caaggggaaat 269  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| |||||     |||||||||||    
T  22197816 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa-aaacaaattacaaggggaaat 22197718  T
Q  270 cggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    || || ||||||||||||| |||||||||||||||||||||||    
T  22197717 cgattaccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22197675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 22240005 - 22240146
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca-----caaggggaaat 269  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| |||||     |||||||||||    
T  22240005 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa-aaacaaattacaaggggaaat 22240103  T
Q  270 cggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    || || ||||||||||||| |||||||||||||||||||||||    
T  22240104 cgattaccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22240146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 36615808 - 36615927
Alignment:
Q  192 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaaaacaccggct 291  Q
    |||||| ||||||| |||| |||||||||||||| ||||||| |||||||| |||||||||  || |||||||||||||||||||||| |||| || |||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaacaaaacaaggggaaatcggttgccac-aaactccagct 36615906  T
Q  292 cgaacaaaaaccccttaaaaa 312  Q
    ||||||||||||| |||||||    
T  36615907 cgaacaaaaaccctttaaaaa 36615927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 176 - 321
Target Start/End: Original strand, 31424761 - 31424912
Alignment:
Q  176 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaac--acaaggggaaatcggt 273  Q
    |||| |||||||| |||||||| |||||||||||| || |||||||||||  |||||| ||||| || |||| |||| ||||  | ||||||||||||||    
T  31424761 ttttttttttgaagcggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggt 31424860  T
Q  274 tgcca--caaaacaccggctcgaacaaaaacccctt--aaaaaccaccctaa 321  Q
    |||||  | |||||||||||||| ||||||||||||  ||||||||||||||    
T  31424861 tgccattcgaaacaccggctcgatcaaaaacccctttaaaaaaccaccctaa 31424912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 1039051 - 1039191
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaac--acaaggggaaatcgg 272  Q
    ||||| ||||| ||||||||||| |||||||||| | |||||||||||||| ||||||| |||||||| |||| |||| ||||  ||||||| |||||||    
T  1039051 tttttttttttcaaacggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtggataaaaaaaacaaacaagggaaaatcgg 1039150  T
Q  273 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    |||| | | ||||   |||||||||||||||||||||||||    
T  1039151 ttgcaatacaaactttggctcgaacaaaaaccccttaaaaa 1039191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 49035865 - 49035983
Alignment:
Q  199 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa----acacaaggggaaatcggttgccaca-aaacaccggctcg 293  Q
    |||||||||||| ||| |||| ||||| ||||||| |||||||| |||| |||| ||    | ||||||||||||||||||||||| ||||||||| |||    
T  49035865 attattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggttcg 49035964  T
Q  294 aacaaaaaccccttaaaaa 312  Q
    |||||||||||||||||||    
T  49035965 aacaaaaaccccttaaaaa 49035983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 193 - 315
Target Start/End: Complemental strand, 41702992 - 41702867
Alignment:
Q  193 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca--caaggggaaatcggttgccaca-aaacaccgg 289  Q
    ||||| ||||| ||||||  ||||||||||||  ||||||| ||| | || |||| |||| |||||  ||||||||| ||||||||| || |||||||||    
T  41702992 caaaatattatcaaccaactagcccgtgcaaggagcactaataagtttgggtggagaaaaaaaacatacaaggggaagtcggttgccgcacaaacaccgg 41702893  T
Q  290 ctcgaacaaaaaccccttaaaaacca 315  Q
    ||||||||||||||||||||||||||    
T  41702892 ctcgaacaaaaaccccttaaaaacca 41702867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 203 - 312
Target Start/End: Complemental strand, 33320817 - 33320710
Alignment:
Q  203 ttaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaacaaaaa 301  Q
    |||||||| |||||||||||||| ||||||| |||||||| ||| |||   ||| |||||||||||| |||||||  | ||||||||||||||||||||     
T  33320817 ttaaccaacaagcccgtgcaagaagcactaataagctcgggtgggaaa---aaaaacaaggggaaattggttgccttacaaacaccggctcgaacaaaac 33320721  T
Q  302 ccccttaaaaa 312  Q
    |||||||||||    
T  33320720 ccccttaaaaa 33320710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 352 - 406
Target Start/End: Original strand, 30655761 - 30655815
Alignment:
Q  352 taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac 406  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||    
T  30655761 taatgacgccggcatatacaaatgacaatccacaagcatacccctgcgtcaacac 30655815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 181 - 321
Target Start/End: Complemental strand, 32679083 - 32678937
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-----gaaaaaataaacacaaggggaaatcggttg 275  Q
    ||||| ||||||| |||  ||||||||||| |||||||||||||| ||||||| |||||||  ||      |||||| ||| ||||||  |||||| |||    
T  32679083 ttttttaaacggctaaattttattaaccaacaagcccgtgcaagacgcactaataagctcgagtgaaaaaaaaaaaaaaaatacaaggaaaaatcgattg 32678984  T
Q  276 ccac-aaaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 321  Q
    || | |||| || |||| |||||||||||||||||||||||| ||||    
T  32678983 ccgctaaaatactggctggaacaaaaaccccttaaaaaccactctaa 32678937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 42598130 - 42598053
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 252  Q
    ||||| ||||| ||||||||||| |||||||||||| || ||||||||||| ||||||| ||||| || |||| ||||    
T  42598130 tttttttttttaaaacggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggagaaaa 42598053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 43397781 - 43397640
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca------caaggggaaatcggtt 274  Q
    |||||||| ||||||| | ||||||||||| || ||||||||||| ||||||| ||||| || || |||||| ||| |      ||| || ||||| |||    
T  43397781 tttttgaatcggcaaata-ttattaaccaataaacccgtgcaagaagcactaa-aagcttgggtgaaaaaaaaaaaaaaacatacaaaggaaaatctgtt 43397684  T
Q  275 gccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    ||||||||||| | |||||||||||||||| | |||||||||||    
T  43397683 gccacaaaacaactgctcgaacaaaaacccttaaaaaaccaccc 43397640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 8e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 188 - 324
Target Start/End: Complemental strand, 38908800 - 38908663
Alignment:
Q  188 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa-taaacacaaggggaaatcggttgccacaaaacac 286  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||| |||||||| || |||||| |||| ||||||| |||||||| ||||||||||||    
T  38908800 aacggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtgaaaaaaaataaatacaagggaaaatcggtagccacaaaacac 38908701  T
Q  287 cggctcgaacaaaaaccccttaaaaaccaccctaacac 324  Q
    ||| |||||||||||||||||||||||||||| |||||    
T  38908700 cggttcgaacaaaaaccccttaaaaaccaccccaacac 38908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 191 - 318
Target Start/End: Complemental strand, 41419748 - 41419617
Alignment:
Q  191 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgccacaa-aacac 286  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||   |||||| ||| ||||||||||||||||||||| || |||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  287 cggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    || |||||||||||||||||||||||||||||    
T  41419648 cgactcgaacaaaaaccccttaaaaaccaccc 41419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 14732334 - 14732473
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggat-ggaaaaaataaacacaaggggaaatcggttgccac 279  Q
    ||||||||| ||||||| |||||||||||| |||||||||| || |||||||| |||||||| | ||||||||  || ||||||||||||||||| || |    
T  14732334 tttttgaaaaggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgggaaaaaaataatacaaggggaaatcggttaccgc 14732433  T
Q  280 -aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
     |||| ||| ||||||||||||||||||||||||||||||    
T  14732434 aaaaataccagctcgaacaaaaaccccttaaaaaccaccc 14732473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 41378216 - 41378332
Alignment:
Q  200 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaacaa 298  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    ||| ||||||||||||||||||||| |||| |||||||||| ||    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtggaaaaat---aca-aaggggaaatcggttgccacacaaactccggctcgaataa 41378311  T
Q  299 aaacccc-ttaaaaaccaccc 318  Q
    ||||||| |||||||||||||    
T  41378312 aaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 22649053 - 22649193
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggt 273  Q
    ||||| |||||||| ||||||||  ||||||||||| |||||||||||||| | ||||| ||||| || | || ||||| | | | ||||||||||||||    
T  22649053 tttttttttttgaagcggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggtagagaaaaaaacaaagaaggggaaatcggt 22649152  T
Q  274 tgcca--caaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    |||||  | ||||||||||| || |||||||||||| ||||    
T  22649153 tgccattccaaacaccggcttgatcaaaaacccctttaaaa 22649193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 43356803 - 43356750
Alignment:
Q  199 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 252  Q
    |||||||||||| ||| |||||||||||||||||| ||| |||| || ||||||    
T  43356803 attattaaccaataagtccgtgcaagatgcactaataagttcgggtgaaaaaaa 43356750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 175 - 318
Target Start/End: Original strand, 40930818 - 40930961
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-aaaaaataaacacaaggggaaatcggt 273  Q
    ||||| ||||||||| ||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||| |||||||| | ||||||||||||||||    
T  40930818 tttttttttttgaaatggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaatacaaacaaggggaaatcggt 40930917  T
Q  274 tgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    || ||| ||||| |||||||||||||||| |||||||||||||||    
T  40930918 tgtcac-aaacaacggctcgaacaaaaactccttaaaaaccaccc 40930961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 13959207 - 13959347
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcg 271  Q
    ||||| ||||||||||||||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| |||   |||||||| | |||| || ||||||    
T  13959207 tttttttttttgaaacggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtggaaaaaaaaatacaaacaaaggaaaatcg 13959306  T
Q  272 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaa 311  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  13959307 gttgccacataaacaccggctcaaacaaaaaccccttaaaa 13959347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 179 - 318
Target Start/End: Original strand, 24200614 - 24200753
Alignment:
Q  179 tatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcca 278  Q
    ||||||| || |||||||| |||||||| ||| ||| |||||||||| ||||||| ||||| || ||||||||| | | ||||||||||||||||||||     
T  24200614 tattttttaatcggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaaggggaaatcggttgccg 24200713  T
Q  279 c-aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    | |||||||||||||||||||||| | ||||||||||||||    
T  24200714 caaaaacaccggctcgaacaaaaa-cacttaaaaaccaccc 24200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 25829259 - 25829399
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgcc 277  Q
    |||||||| ||||||| | ||||||||||| |||||||||||||| ||||||| |||||||| |||   |||||||| | ||||||||||||||||| ||    
T  25829259 tttttgaatcggcaaata-ttattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaaatacaaacaaggggaaatcggtttcc 25829357  T
Q  278 aca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
      | ||||||||||| ||| ||||||||||||||||||||||    
T  25829358 ctataaacaccggcttgaataaaaaccccttaaaaaccaccc 25829399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 174 - 318
Target Start/End: Original strand, 5200469 - 5200615
Alignment:
Q  174 ctttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-acacaaggggaaatcgg 272  Q
    |||||| ||||| || |||||||| |||||||||||| ||| ||||||||||  |||||| ||| | || |||| |||| || | ||||||| |||||||    
T  5200469 cttttttttttttaatcggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaaaacatacaagggaaaatcgg 5200568  T
Q  273 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||    
T  5200569 ttgccgcacaaacaccggctcgaacaaaaaccccttaaaaatcaccc 5200615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 22839391 - 22839250
Alignment:
Q  182 ttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga--aaaaataaacacaaggggaaatcggttgcc-- 277  Q
    ||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||| |||||||||  ||||| | | | ||| ||||||||||||||      
T  22839391 ttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccat 22839292  T
Q  278 acaaaacaccggctcgaacaaaaa-ccccttaaaaaccaccc 318  Q
    | |||||| ||||||||||||||| ||| |||||||||||||    
T  22839291 ataaaacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 175 - 318
Target Start/End: Original strand, 38086402 - 38086551
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcg 271  Q
    ||||| |||| ||| | |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||   |||||||| | | ||||| ||||||    
T  38086402 ttttttttttagaatcagcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcg 38086501  T
Q  272 gttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 318  Q
    ||||||| | |||| | ||||||||||||||||||||  |||||||||||    
T  38086502 gttgccatacaaactctggctcgaacaaaaacccctttaaaaaaccaccc 38086551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 10124935 - 10124866
Alignment:
Q  245 ggaaaaaataaacacaaggggaaatcggttgcc--acaaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    |||||||| | | ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  10124935 ggaaaaaaaacaaacaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 10124866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 318
Target Start/End: Original strand, 30836116 - 30836272
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaac----aagctcggatgga-------aaaaataaacacaagg 263  Q
    ||||| |||||||| |||||||| |||||||||||| |||| ||||| ||| |||||||     |||||||||||||       ||||| ||| | ||||    
T  30836116 tttttttttttgaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaattaataagctcggatggagaaaaaaaaaaaaaaaaagaagg 30836215  T
Q  264 ggaaatcggttgccaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 318  Q
    |||||||| ||||| || ||| ||||||||||||||||||||| |||||||||||||    
T  30836216 ggaaatcgattgccgcacaaataccggctcgaacaaaaacccctttaaaaaccaccc 30836272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 7845184 - 7845135
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaag 224  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  7845184 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaag 7845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 44362918 - 44362994
Alignment:
Q  176 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 252  Q
    |||| |||||||||||| |||  |||||||||||| || || |||||||| ||||||| ||| ||||||||||||||    
T  44362918 ttttttttttgaaacggaaaattattattaaccaacaatcctgtgcaagaagcactaataagttcggatggaaaaaa 44362994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 38542725 - 38542786
Alignment:
Q  88 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtg 149  Q
    |||||||||||||| ||||| || | ||||||||| || |||||||||||||||| ||||||    
T  38542725 taagagaaaacaactttgaaagaaagtgagaggaaatgatgttggtgatgtgagaatgagtg 38542786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 584123 - 584187
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 239  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  584123 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 7845138 - 7845080
Alignment:
Q  259 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    |||||||||||||||||| |||  |||||||||||||||  || |||||||||||||||||    
T  7845138 caaggggaaatcggttgcaacattaacaccggctcgaac--aatccccttaaaaaccaccc 7845080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 191 - 312
Target Start/End: Complemental strand, 16572198 - 16572074
Alignment:
Q  191 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgccac-aaaacacc 287  Q
    ||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||  |||||||||| |||||||||||||||||||| | ||||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacacc 16572099  T
Q  288 ggctcgaacaaaaaccccttaaaaa 312  Q
    || |||||||||| ||| |||||||    
T  16572098 ggttcgaacaaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 47571560 - 47571694
Alignment:
Q  176 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-gaaaaaataaacacaaggggaaatcggtt 274  Q
    |||| |||||||| |||||||| |||||||||||| || |||||| |||  ||||||| |||||||| ||  |||||||||| ||||||| |||| ||||    
T  47571560 ttttttttttgaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtgaaaaaaaataaatacaagggaaaattggtt 47571659  T
Q  275 gccacaaaacaccggctcgaacaaaaaccccttaaa 310  Q
    ||||| |||||||||||| |||||||||||||||||    
T  47571660 gccac-aaacaccggctcaaacaaaaaccccttaaa 47571694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 175 - 318
Target Start/End: Complemental strand, 32183425 - 32183275
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaag-aagcccgtgcaagatgcactaacaagctcggatggaa-aaaataaacaca--aggggaaatc 270  Q
    ||||| ||||| || |||||||| ||||||||||||  |||||||||||||  ||||||| |||||||| ||||| |||| ||||| |  ||||||||||    
T  32183425 tttttttttttaaatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatc 32183326  T
Q  271 ggttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 318  Q
    |||||||| | |||||||||||||||||||||||||||  |||||||||||    
T  32183325 ggttgccatacaaacaccggctcgaacaaaaacccctttaaaaaaccaccc 32183275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 15186975 - 15187072
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggttgcc 277  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||| |||||  || ||||||||||||||||||||    
T  15186975 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggataaaaaagaatacaaggggaaatcggttgcc 15187072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 5341793 - 5341706
Alignment:
Q  88 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatatatttataggagct 175  Q
    ||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| | ||||||  | ||||||||||||||    
T  5341793 taagagaaaacgaccttgaaagagaatgagaggaagtgatgttggtgatgtgagagtgagtctgagggtttgtttatttataggagct 5341706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 181 - 315
Target Start/End: Original strand, 55133102 - 55133233
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 280  Q
    ||||||||||| ||||| ||||||||||   |||||||||||||| ||||||| || |||||||| ||| || | | |||| ||||||| | ||||||||    
T  55133102 tttttgaaacgacaaaatattattaacc---aagcccgtgcaagaagcactaataaactcggatgaaaagaaaacaaacaa-gggaaattgattgccaca 55133197  T
Q  281 -aaacaccggctcgaacaaaaaccccttaaaaacca 315  Q
     ||||| | |||||||||||||||| ||||||||||    
T  55133198 caaacatcagctcgaacaaaaaccctttaaaaacca 55133233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 25641263 - 25641407
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgc 276  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||| ||||||| ||||| || |||    |||||||| | | |||||||||| ||||||    
T  25641263 tttttgaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgc 25641362  T
Q  277 caca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 318  Q
    || |  |||| |||||||||||||||||| ||  |||||||||||    
T  25641363 catactaacatcggctcgaacaaaaacccttttaaaaaaccaccc 25641407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 181 - 319
Target Start/End: Original strand, 16662301 - 16662441
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcc--a 278  Q
    |||||||| | |||||| |||||||||||| |||||||||| ||| ||||||| |||||  | ||||||||| |   | ||||| ||||| ||||||  |    
T  16662301 tttttgaatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtggaaaaaa-actaagaagggaaaatctgttgccata 16662399  T
Q  279 caaaacaccggctcgaacaaaaacccc-ttaaaaaccaccct 319  Q
    |||||||| |||||| ||||||||||| ||||||||||||||    
T  16662400 caaaacactggctcgtacaaaaacccctttaaaaaccaccct 16662441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 181 - 317
Target Start/End: Original strand, 42390766 - 42390906
Alignment:
Q  181 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga---aaaaataaacacaaggggaaatcggttgcc 277  Q
    |||||||| |||| |||  |||||  |||| |||||||||||||| | ||||| |||||||| ||||   ||||| ||| | ||||   |||||||||||    
T  42390766 tttttgaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtggagaaaaaaacaaataaaaggaacaatcggttgcc 42390865  T
Q  278 ac-aaaacaccggctcgaacaaaaaccccttaaaaaccacc 317  Q
     | ||||||||||||| ||||||||||||||||||||||||    
T  42390866 gctaaaacaccggctcaaacaaaaaccccttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 25222278 - 25222218
Alignment:
Q  115 gagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatatatttataggagct 175  Q
    ||||| ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||    
T  25222278 gagagaaagtgatgttggtgatgtgagagtgagtataaaggtttatttatttataggagct 25222218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 45511390 - 45511440
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaaga 225  Q
    ||||| |||||||| | |||||| |||||||||||| ||||||||||||||    
T  45511390 tttttttttttgaatcagcaaaatattattaaccaacaagcccgtgcaaga 45511440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 199 - 318
Target Start/End: Original strand, 23172985 - 23173107
Alignment:
Q  199 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaa 295  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||  |||||||| | |||||| |||||| ||||||  | |||||||||||||||    
T  23172985 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggctcgaa 23173084  T
Q  296 caaaaaccccttaaaaaccaccc 318  Q
    ||||| |||||||||||||||||    
T  23173085 caaaacccccttaaaaaccaccc 23173107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 193 - 318
Target Start/End: Complemental strand, 22887337 - 22887211
Alignment:
Q  193 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaa-aaaataaacacaaggggaaatcggttgccacaaaacaccggct 291  Q
    ||||| |||||||||||| |||||||||| ||||||||||| |||||||| ||| | |||| ||| | ||||| ||||| |||||||||||| || || |    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgggagaaaaaaaatataagggaaaatcagttgccacaaaagacaggtt 22887238  T
Q  292 cgaacaaaaaccccttaaaaaccaccc 318  Q
    | |||||||||||||||||||||||||    
T  22887237 caaacaaaaaccccttaaaaaccaccc 22887211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 175 - 318
Target Start/End: Original strand, 9931785 - 9931935
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-------aaaaaataaacacaaggggaa 267  Q
    ||||| |||||||||||| ||| | ||||||||||| |||||||||||||| ||||||||||||| || |||       |||||||| | || |||||||    
T  9931785 tttttttttttgaaacggtaaata-ttattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgggaagaaaaaaaaatacaaacgaggggaa 9931883  T
Q  268 atcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    |||||||||| || ||||||| |||||||||||||| ||| |||||||||||    
T  9931884 atcggttgccgcacaaacaccagctcgaacaaaaacacctcaaaaaccaccc 9931935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 193 - 327
Target Start/End: Complemental strand, 25539947 - 25539810
Alignment:
Q  193 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata----aacacaaggggaaatcggttgccacaaaacaccg 288  Q
    ||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| || |||||| |    || ||||| |||||||||||||||  ||||| ||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtgaaaaaaaaacaaaaatacaagaggaaatcggttgccatcaaacatcg 25539849  T
Q  289 gctcgaacaaaaaccccttaaaaaccaccctaacactaa 327  Q
    |||||||||||||||||||||||||||||| || |||||    
T  25539848 gctcgaacaaaaaccccttaaaaaccaccccaaaactaa 25539810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 10431204 - 10431063
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaac--acaaggggaaatcg 271  Q
    ||||| |||||||||||| |||| |||||||| ||| || ||||||||||| ||| ||| ||| |||| |||| ||||| ||||  |||||| |||||||    
T  10431204 tttttttttttgaaacggaaaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaaaaaaacaaacaaggagaaatcg 10431105  T
Q  272 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    ||||||||| |||||||| |||||||||||||| | ||||||    
T  10431104 gttgccacacaaacaccgactcgaacaaaaacctcataaaaa 10431063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 819134 - 819254
Alignment:
Q  192 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata-aacacaaggggaaatcggttgccacaaaacaccggc 290  Q
    |||||| ||||||| |||| ||| ||||| |||| ||||||| ||| |||| ||||||||| | || |||| |||||||||||||||||||| ||||  |    
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtggaaaaaaaataaaacaaagggaaatcggttgccacaaa-caccaac 819232  T
Q  291 tcgaacaaaaaccccttaaaaa 312  Q
    ||||||||||||||||||||||    
T  819233 tcgaacaaaaaccccttaaaaa 819254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 318
Target Start/End: Original strand, 3677779 - 3677924
Alignment:
Q  176 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata----aacacaaggggaaatcg 271  Q
    |||| |||||||| | |||| | ||||||| |||| |||||| ||| ||||||||||| |||||||| ||||||||| |    || |||||||  |||||    
T  3677779 ttttttttttgaatcagcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtggaaaaaaaacaagaatacaagggacaatcg 3677877  T
Q  272 gttgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 318  Q
    |||||| ||| |||| ||||| |||||||||||||||||||||||||    
T  3677878 gttgccgcaatacactggctcaaacaaaaaccccttaaaaaccaccc 3677924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 42241577 - 42241708
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggat--ggaaaaaataaacacaaggggaaatcgg 272  Q
    ||||| ||||| || |||||||| |||||||||||| ||| ||| |||||||||||||| ||||||||||  | |||||||| | | |||||||||||||    
T  42241577 ttttttttttttaatcggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcggatgagaaaaaaatacaaagaaggggaaatcgg 42241676  T
Q  273 ttgccaca-aaacaccggctcgaacaaaaacc 303  Q
    | |||| | |||| |||||| |||||||||||    
T  42241677 tcgccatacaaactccggcttgaacaaaaacc 42241708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 2292222 - 2292168
Alignment:
Q  260 aaggggaaatcggttgcc--acaaaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2292222 aaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 2292168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 9597742 - 9597800
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 233  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| |||||||    
T  9597742 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaa 9597800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 33112703 - 33112844
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagc-tcggatggaaaaaataaaca--caaggggaaatcg 271  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||| | ||  |||||||| |||||  |||||||||||||    
T  33112703 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagcttgggggggaaaaaaaaaacaagcaaggggaaatcg 33112802  T
Q  272 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 312  Q
    ||||||| | ||||   |||||||||||||||||||||||||    
T  33112803 gttgccatacaaactttggctcgaacaaaaaccccttaaaaa 33112844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 10247049 - 10246910
Alignment:
Q  181 tttttgaaacggcaaaaa-attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccac 279  Q
    ||||| || ||||||||| |||||||||||| |||||||||||||| ||||||| | | || | |||| |||| | | | ||||| |||||||||| |||    
T  10247049 ttttttaatcggcaaaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaacaaagaagggaaaatcggttgtcac 10246950  T
Q  280 aaaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 318  Q
    | |||||||||||||||||||||||| |||||||||||||    
T  10246949 acaacaccggctcgaacaaaaacccctttaaaaaccaccc 10246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 174 - 406
Target Start/End: Complemental strand, 11546912 - 11546685
Alignment:
Q  174 ctttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-gaaaaaataaacacaaggggaaatcgg 272  Q
    |||||| ||||| ||||||||||| |||||||||  | |||||||||||||  ||||||| |||||||| || ||||||| | | | |||| ||||||||    
T  11546912 cttttttttttttaaacggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggtgagaaaaaaaacaaagaaggagaaatcgg 11546813  T
Q  273 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatataca 371  Q
    ||| || | |||||||||||||||||||||| |||||||||     ||| | |||| | |  |||||||    |||| | ||||||||||||||||||||    
T  11546812 ttgtcatacaaacaccggctcgaacaaaaactccttaaaaa----actacccctaaagaaggaactacc---tacaagagtaatgacgcagacatataca 11546720  T
Q  372 aatgacaatccgcaagcatacccctgcatcaacac 406  Q
     |||||||||| || | |||||||||| |||||||    
T  11546719 tatgacaatcctcatgaatacccctgcgtcaacac 11546685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 319
Target Start/End: Complemental strand, 6575860 - 6575720
Alignment:
Q  184 ttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgccac 279  Q
    ||||| |||||||| |||||||| ||| |||||||||||||| ||||||| ||| |||| |||    |||||||| |||||| || ||||| |||| ||     
T  6575860 ttgaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtggaagaaaaaaatacacacaaaggaaaatcagttgtcat 6575761  T
Q  280 a-aaacaccggctcgaacaaaaaccccttaaaaaccaccct 319  Q
    | ||||| ||||||||||||||||| |||||||||||||||    
T  6575760 acaaacatcggctcgaacaaaaacctcttaaaaaccaccct 6575720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 176 - 318
Target Start/End: Complemental strand, 15859244 - 15859093
Alignment:
Q  176 ttttatttttgaaacggcaaaaaattattaaccaaga--agcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaa----ggggaaat 269  Q
    |||| |||| ||| |||||||| |||||||| ||| |  ||||||||||||  ||||||| |||||||| |||| |||| ||| ||||    ||||||||    
T  15859244 tttttttttagaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaat 15859145  T
Q  270 cggttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 318  Q
    ||||||||| | |||||||||||||||||||||||||||  |||||||||||    
T  15859144 cggttgccaaacaaacaccggctcgaacaaaaacccctttaaaaaaccaccc 15859093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 175 - 406
Target Start/End: Complemental strand, 34761306 - 34761080
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcgg 272  Q
    ||||| |||||||||||||||| | ||||||| | | |||||||||||||  ||||||| |||||||| |||  |||||||| | | |||  ||||||||    
T  34761306 tttttttttttgaaacggcaaata-ttattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaaaatacaaagaagaagaaatcgg 34761208  T
Q  273 ttgccaca-aaacaccggctcgaacaaaaacccctt-aaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatac 370  Q
    ||| || | |||||||| ||||||||||||| |||| |||||||||||     |||| | |  |||||||    |||| | ||||||||||| |||||||    
T  34761207 ttgtcatacaaacaccgactcgaacaaaaactccttaaaaaaccaccc-----ctaaagaaggaactacc---tacaacagtaatgacgcaggcatatac 34761116  T
Q  371 aaatgacaatccgcaagcatacccctgcatcaacac 406  Q
    | |||||||||| || | |||||||||| |||||||    
T  34761115 atatgacaatcctcatgaatacccctgcgtcaacac 34761080  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 33984814 - 33984753
Alignment:
Q  259 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaacccctt-aaaaaccaccc 318  Q
    |||||||||||||||||||| | |||||| || ||||||||||||||||| |||||||||||    
T  33984814 caaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccaccc 33984753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 12754422 - 12754465
Alignment:
Q  190 cggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 233  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  12754422 cggcaaaaaattattaaccaacaaacccgtgcaagacgcactaa 12754465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 12883 - 12947
Alignment:
Q  175 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 239  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  12883 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 8012 - 7956
Alignment:
Q  177 tttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 233  Q
    ||||||||| || |||||||| |||||||||||| |||||  ||||| |||||||||    
T  8012 tttatttttaaatcggcaaaatattattaaccaacaagcctatgcaaaatgcactaa 7956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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