View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12873_high_6 (Length: 590)
Name: NF12873_high_6
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12873_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 237 - 470
Target Start/End: Original strand, 31788381 - 31788613
Alignment:
| Q |
237 |
aacctgtggtttcatcaactccaactccatgatgttgttgatgatgtccatgaccatgaccagtagccccggtcatcccaccaccactaatgggattgcc |
336 |
Q |
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| T |
31788381 |
aacctgtggtttgatcaactccaactccatgatgttgttgatgatgtccatgaccatgaccagtagcaccggtcatcccaccaccactaatgggattgcc |
31788480 |
T |
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| Q |
337 |
atattgatcaacttggccttgactagtcaatgggtttccatattcatcaaccctacgtgtttgatcaccataaccttgttgatattgagacattgttata |
436 |
Q |
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| T |
31788481 |
atattgatcaacttggccttgactagtcaatgggtttccatattcatcaaccctacgtgtttgatcaccataaccttgttgatattgagacattgttata |
31788580 |
T |
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| Q |
437 |
atttcttcttcacaaacaaaaaataacgtgaagt |
470 |
Q |
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| T |
31788581 |
a-ttcttcttcacaaacaaaaaataacgtgaagt |
31788613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 31788613 - 31788507
Alignment:
| Q |
121 |
acttcgcgttattttttgtttgtgaagaagaaattataacaatgtctcaatatcaacaaggttatggtgatcaaacacgtagggttgatgaatatggaaa |
220 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31788613 |
acttcacgttattttttgtttgtgaagaagaa-ttataacaatgtctcaatatcaacaaggttatggtgatcaaacacgtagggttgatgaatatggaaa |
31788515 |
T |
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| Q |
221 |
cccattga |
228 |
Q |
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| T |
31788514 |
cccattga |
31788507 |
T |
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