View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12873_high_7 (Length: 557)
Name: NF12873_high_7
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12873_high_7 |
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| [»] scaffold1462 (1 HSPs) |
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| [»] scaffold1880 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 555
Target Start/End: Original strand, 18315798 - 18316335
Alignment:
| Q |
17 |
tgcagttaagataatggttccacctatacccaaaagaggaagaagaaataataatgcagatatgattaatgaattatctgattgcattaacattcatatt |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
18315798 |
tgcagttaagataatggttccaccgatacccaaaagaggaagaagcaataataatgaagatatgattagtgaattatctgattgcattatcattcatatt |
18315897 |
T |
|
| Q |
117 |
ttatcttatttggatgccacagtgaacgagcagaacctgtgttttatccaagagatgggaagatctttggnnnnnnnttccatcactaacattggattca |
216 |
Q |
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||||||||||||||||||| | | | || ||| || ||||||| |||||||||||| |||| ||| |||||||||| |||||||||||| |
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| T |
18315898 |
ttatcttatttggatgccaaaatcgctgttca-aacttgccttttatctaagagatgggaaaatctctggaaaaaaattccatcacttacattggattca |
18315996 |
T |
|
| Q |
217 |
actcaattttccacttcatataagttatccacattcctttctaggttttccgatcttcgtgatgattcaattgcactatgcactcttgattttaagcttg |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18315997 |
actcaattttccacttcatataagctatccacattcctttctaggttttccgatcttcgtgatgattcaattgcactacgcactcttgattttaagcttg |
18316096 |
T |
|
| Q |
317 |
ttacttgtagtaacgaggactgccagtcaatcctgtcttcagtgccttcgtttcaaacactaacgtcacttaagcttgctgttaatgtacgctcatcggt |
416 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | | || |
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| T |
18316097 |
ttactcgtagtaacgaggactgccagtcaatcctgtcttcaatgccttcgtttcaaacactaacgtcacttaagcttgctgttaatatacgcccttggga |
18316196 |
T |
|
| Q |
417 |
tattctcaaagcattttttccggactatctgaaatttccggcattggttaatttggaactaactaatttgatgtttagagatagtgaaaatgtcgattat |
516 |
Q |
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| T |
18316197 |
ttctctcaaagcattttttcctgactatctgaaatttccttcattggttaatttggaactaactaatttgatgtttagagatagggaaaatgtcggttat |
18316296 |
T |
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| Q |
517 |
gttgagccttttttgggcttcaaaaagttgaatagtttg |
555 |
Q |
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||||||||||||| || |||||||||||||||||||||| |
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| T |
18316297 |
gttgagcctttttcggtcttcaaaaagttgaatagtttg |
18316335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 18312375 - 18312490
Alignment:
| Q |
17 |
tgcagttaagataatggttccacctatacccaaaagaggaagaagaaataataatgcagatatgattaatgaattatctgattgcatta-acattcatat |
115 |
Q |
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||||||| ||||||||||||||| ||| || |||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
18312375 |
tgcagttgtgataatggttccaccgatatccgaaagaggaagaagaaataataaggaagatatgattagtgaattatctgattgcattatccattcatat |
18312474 |
T |
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| Q |
116 |
tttatcttatttggat |
131 |
Q |
| |
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|||| ||||| ||||| |
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| T |
18312475 |
tttaacttatctggat |
18312490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1462 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: scaffold1462
Description:
Target: scaffold1462; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 29 - 548
Target Start/End: Original strand, 926 - 1439
Alignment:
| Q |
29 |
aatggttccacctatacccaaaagaggaagaagaaataataatgcagatatgattaatgaattatctgattgcattaacattcatattttatcttatttg |
128 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
926 |
aatggttccaccgatacccaaaagaggaagaagaaataataatgaagatatgattagtgaattatctgattgcattatcattctaattttatcttatttg |
1025 |
T |
|
| Q |
129 |
gatgccacagtgaacgagcagaacctgtgttttatccaagagatgggaagatctttggnnnnnnnttccatcactaacattggattcaactcaattttcc |
228 |
Q |
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||| || | | | || ||| || ||||||| ||||||||| ||||| | ||| ||||||| || ||||| ||||||||||||||| |
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| T |
1026 |
gattcccaaattgctgttca-aacttgcattttatcaaagagatggaaagatatctggaaacaaattccatctcttacattcacttcaactcaattttca |
1124 |
T |
|
| Q |
229 |
acttcatataagttatccacattcctttctaggttttccgatcttcgtgatgattcaattgcactatgcactcttgattttaagcttgttacttgtagta |
328 |
Q |
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||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| || ||||||||| |||||| |
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| T |
1125 |
ccttcagataagcagtccatattcctttctaggttttcctatcttcgtgatgattcaattacac-----actcttgatttgaaccttgttactagtagta |
1219 |
T |
|
| Q |
329 |
acgaggactgccagtcaatcctgtcttcagtgccttcgtttcaaacactaacgtcacttaagcttgctgttaatgtacgctcatcggttattctcaaagc |
428 |
Q |
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| ||||||||||||||||||||||| || || |||||||||| ||||||||||||||||||||| |||||| ||| | | |||| || ||||| |
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| T |
1220 |
atgaggactgccagtcaatcctgtcatctatgtcttcgtttcagacactaacgtcacttaagcttcatgttaaaatacaccctagggtttatcaaaaagc |
1319 |
T |
|
| Q |
429 |
attttttccggactatctgaaatttccggcattggttaatttggaactaactaatttgatgtttagagatagtgaaaatgtcgattatgttgagcctttt |
528 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
1320 |
attttttcctgactatctgaaatttccagcattggttaatttggaactaactaatttgatgtttagagatagtgaaaatgtcggtgatgttgagcctttt |
1419 |
T |
|
| Q |
529 |
ttgggcttcaaaaagttgaa |
548 |
Q |
| |
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| || |||| |||| ||||| |
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| T |
1420 |
tcggtcttccaaaatttgaa |
1439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1880 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: scaffold1880
Description:
Target: scaffold1880; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 17 - 555
Target Start/End: Complemental strand, 851 - 314
Alignment:
| Q |
17 |
tgcagttaagataatggttccacctatacccaaaagaggaagaagaaataataatgcagatatgattaatgaattatctgattgcattaacattcatatt |
116 |
Q |
| |
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||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
851 |
tgcagttgagacaatggttccactgatacccaaaagaggaagaagaaataataatgaagatatgattagtgaattatctgattgcattatcattcatatt |
752 |
T |
|
| Q |
117 |
ttatcttatttggatgccacagtgaacgagcagaacctgtgttttatccaagagatgggaagatctttggnnnnnnnttccatcactaacattggattca |
216 |
Q |
| |
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|||||||||||| || ||| | | | | |||| || |||||||| ||||||||| ||||| | ||| | ||||||| |||||| |||| |
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| T |
751 |
ttatcttatttgaataccaaaatcgctgttc-gaacttgcgttttatcaaagagatggaaagatatctggaaaaaaatgtcatcacttacattgatttca |
653 |
T |
|
| Q |
217 |
actcaattttccacttcatataagttatccacattcctttctaggttttccgatcttcgtgatgattcaattgcactatgcactcttgattttaagcttg |
316 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||||| ||| |
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| T |
652 |
actcaattttccacttcatataagttttccacattcctttctaggttttcagatcttcgcgatgattcaactgcactgcacactcttgattttatgctca |
553 |
T |
|
| Q |
317 |
ttacttgtagtaacgaggactgccagtcaatcctgtcttcagtgccttcgtttcaaacactaacgtcacttaagcttgctgttaatgtacgctcatcggt |
416 |
Q |
| |
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||||| |||| | || | ||||||||||||||||||| | || ||||||| |||||||| ||||||||||||| ||| || | | | | | | |
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|
| T |
552 |
ttactagtagggataagaatcgccagtcaatcctgtcttctatatctacgtttcagacactaacaacacttaagcttgccgtttatacaaacccttggat |
453 |
T |
|
| Q |
417 |
tattctcaaagcattttttccggactatctgaaatttccggcattggttaatttggaactaactaatttgatgtttagagatagtgaaaatgtcgattat |
516 |
Q |
| |
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| || ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |
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| T |
452 |
ttatcacaaagcattctttccagactatctgaaatttccgacattggttaatttggaactaactaatttcatctttagagatagtgaaaatgtcggttat |
353 |
T |
|
| Q |
517 |
gttgagccttttttgggcttcaaaaagttgaatagtttg |
555 |
Q |
| |
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||||||||||||| | ||| || ||||||||||||||| |
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|
| T |
352 |
gttgagcctttttcgttctttaataagttgaatagtttg |
314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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