View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12873_high_8 (Length: 453)
Name: NF12873_high_8
Description: NF12873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12873_high_8 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 40 - 431
Target Start/End: Complemental strand, 30264764 - 30264373
Alignment:
| Q |
40 |
tttttatgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatataggtgagagataa |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30264764 |
tttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatataggtgagagataa |
30264665 |
T |
|
| Q |
140 |
agatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264664 |
agatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcaa |
30264565 |
T |
|
| Q |
240 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264564 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
30264465 |
T |
|
| Q |
340 |
cttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgat |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264464 |
cttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgat |
30264373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 40 - 431
Target Start/End: Original strand, 30287424 - 30287815
Alignment:
| Q |
40 |
tttttatgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatataggtgagagataa |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30287424 |
tttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatataggtgagagataa |
30287523 |
T |
|
| Q |
140 |
agatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287524 |
agatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcaa |
30287623 |
T |
|
| Q |
240 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287624 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
30287723 |
T |
|
| Q |
340 |
cttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgat |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287724 |
cttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgat |
30287815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 122 - 430
Target Start/End: Complemental strand, 30271576 - 30271268
Alignment:
| Q |
122 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
221 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||| |||||||| || || |||||||| | | |||||| | |||||||||| ||| ||| |
|
|
| T |
30271576 |
tatataggtgagagacaaagatggcaaaatgaaatggaaaaaggtagaggtgaagcctgaagatcatatgcacgttccaatattccctaaaagtgaatca |
30271477 |
T |
|
| Q |
222 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
321 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||||||| | || || | |
|
|
| T |
30271476 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatacatttaattaaat |
30271377 |
T |
|
| Q |
322 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
421 |
Q |
| |
|
|||||||||| |||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30271376 |
atccaacaagaaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30271277 |
T |
|
| Q |
422 |
agctgatga |
430 |
Q |
| |
|
||||||||| |
|
|
| T |
30271276 |
agctgatga |
30271268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 122 - 430
Target Start/End: Original strand, 30280613 - 30280921
Alignment:
| Q |
122 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
221 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
|
|
| T |
30280613 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30280712 |
T |
|
| Q |
222 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
321 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
|
|
| T |
30280713 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30280812 |
T |
|
| Q |
322 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
421 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30280813 |
atccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30280912 |
T |
|
| Q |
422 |
agctgatga |
430 |
Q |
| |
|
||||||||| |
|
|
| T |
30280913 |
agctgatga |
30280921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 122 - 430
Target Start/End: Complemental strand, 30304643 - 30304335
Alignment:
| Q |
122 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
221 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
|
|
| T |
30304643 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30304544 |
T |
|
| Q |
222 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
321 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
|
|
| T |
30304543 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30304444 |
T |
|
| Q |
322 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
421 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30304443 |
atccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30304344 |
T |
|
| Q |
422 |
agctgatga |
430 |
Q |
| |
|
|| |||||| |
|
|
| T |
30304343 |
agttgatga |
30304335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 279 - 431
Target Start/End: Complemental strand, 30048723 - 30048571
Alignment:
| Q |
279 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtg |
378 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30048723 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30048624 |
T |
|
| Q |
379 |
atggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgat |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30048623 |
atggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgat |
30048571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 279 - 431
Target Start/End: Complemental strand, 30063064 - 30062912
Alignment:
| Q |
279 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtg |
378 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30063064 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30062965 |
T |
|
| Q |
379 |
atggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgat |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30062964 |
atggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgat |
30062912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 273 - 431
Target Start/End: Complemental strand, 30032483 - 30032325
Alignment:
| Q |
273 |
gaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcac |
372 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30032483 |
gaaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaaacttcatcatgcac |
30032384 |
T |
|
| Q |
373 |
ttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgat |
431 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30032383 |
ttggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgat |
30032325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 291 - 431
Target Start/End: Complemental strand, 30228850 - 30228710
Alignment:
| Q |
291 |
aaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctc |
390 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30228850 |
aaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttaatcatgcacttggtgatggttactctc |
30228751 |
T |
|
| Q |
391 |
tcatgggtgctcttctttcttgtcttcatagagctgatgat |
431 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
30228750 |
tcatgagtgctcttctttcttgtcttcaaagagctgatgat |
30228710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 286 - 431
Target Start/End: Original strand, 30220209 - 30220354
Alignment:
| Q |
286 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggtta |
385 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| || | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
30220209 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggtta |
30220308 |
T |
|
| Q |
386 |
ctctctcatgggtgctcttctttcttgtcttcatagagctgatgat |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30220309 |
ctctctcatgggtgctcttctttcttgtcttcaaagagctgatgat |
30220354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 79679 - 79567
Alignment:
| Q |
297 |
ctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgg |
396 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||| ||||| ||| ||| || ||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
79679 |
ctttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggttactctctaatgg |
79580 |
T |
|
| Q |
397 |
gtgctcttctttc |
409 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
79579 |
gtgcacttctttc |
79567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 72612 - 72506
Alignment:
| Q |
300 |
tgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtg |
399 |
Q |
| |
|
|||||||| ||| |||| || |||||||||| ||||| ||| ||| || ||||||||||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
72612 |
tgggaaattcatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggttactctctaatgggag |
72513 |
T |
|
| Q |
400 |
ctcttct |
406 |
Q |
| |
|
||||||| |
|
|
| T |
72512 |
ctcttct |
72506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 2311381 - 2311448
Alignment:
| Q |
348 |
ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtct |
415 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
2311381 |
ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtct |
2311448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University