View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12874_low_1 (Length: 434)
Name: NF12874_low_1
Description: NF12874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12874_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 31597848 - 31597440
Alignment:
| Q |
11 |
cagagaagaaattgtggaaattatcacgcatttaactaaagttgaaagtgaaaggtgaagagttgaatgaatcaactatattattaattttaagttgact |
110 |
Q |
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| T |
31597848 |
cagagaagaaagtgttgaaattatcacgcatttaactaaagttgaaagtgaaaggtgaagagttgaatgaatcaactctatcattaattttaagttgact |
31597749 |
T |
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| Q |
111 |
aagtcaaatctatatttttatcacaccaaaaccaatcttatcactcacactttgttccaccacatacttctttgttgtagcccaagaatgaaacctttga |
210 |
Q |
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| T |
31597748 |
aagtcaattctatatttttatcacaccaaaaccaatcttatcactcacactttgttccaccacatacttctttgttctagcccaagaatgaaacctttga |
31597649 |
T |
|
| Q |
211 |
ttcatcattcttcttccattgttattttcttttactccataatattgatgatctcaatcatcaatattccaaagtgtctttgtgatgataataaccaata |
310 |
Q |
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| T |
31597648 |
ttcatcattcttcttccattgttattttcttttactccataatattgatgatctcaatcatcaatattccaaagtgtctttgtgttgataataaccaata |
31597549 |
T |
|
| Q |
311 |
cacaaactgtagcaaaacttttaactgtgaaagcaacatcacaaatctagaatatcccttctggggagaaaatagaggaaagttttgtggtgtttctgat |
410 |
Q |
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| T |
31597548 |
cacaaactgtagcaaaacttttaactgtgaaagcaacatcacaaatcttgaatatccattctggggagaaaatagaggaaattattgtggtgtttccgat |
31597449 |
T |
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| Q |
411 |
cctaatatg |
419 |
Q |
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| T |
31597448 |
cctaatatg |
31597440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 385
Target Start/End: Complemental strand, 31616726 - 31616600
Alignment:
| Q |
259 |
tgatctcaatcatcaatattccaaagtgtctttgtgatgataataaccaatacacaaactgtagcaaaacttttaactgtgaaagcaacatcacaaatct |
358 |
Q |
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|||||||||||||||||||||||| |||| | ||||||||| | |||||||||||||||||| ||| |||||||||| | ||||| |||||| || | |
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| T |
31616726 |
tgatctcaatcatcaatattccaacgtgtatgtgtgatgatgacgaccaatacacaaactgtaacaacgcttttaactgcggaagcagcatcacgaacat |
31616627 |
T |
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| Q |
359 |
agaatatcccttctggggagaaaatag |
385 |
Q |
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| T |
31616626 |
caagtatccattctggggagaaaatag |
31616600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 403
Target Start/End: Original strand, 52170402 - 52170463
Alignment:
| Q |
342 |
agcaacatcacaaatctagaatatcccttctggggagaaaatagaggaaagttttgtggtgt |
403 |
Q |
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| T |
52170402 |
agcaacatcacaaatctcaagtatccgttcaggggaggaaatagaggaaagtattgcggtgt |
52170463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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