View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12875_high_2 (Length: 233)
Name: NF12875_high_2
Description: NF12875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12875_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 3651210 - 3651404
Alignment:
| Q |
23 |
aagtggatgtcaaacacgtcaatggggttggtaagaatatcatgaagctaattaattctagtaattgaaatgaattgaaagagttgcatgtgtatcttaa |
122 |
Q |
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| T |
3651210 |
aagtggatgtcaaaaacgtcaatggggttggtaagaatatcatgaagctaattaattatagtaatgaaaataaagtgaaagagttgcatgtgtatcttaa |
3651309 |
T |
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| Q |
123 |
aacagaaaacgtggcaatcgattttgatatggttaggggttctagaagaaacaacaatgccacaaagtagaaatgttaaacatttttcttaagact |
218 |
Q |
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| T |
3651310 |
aacagaaaa-gtggcaatcgattttgatatgtttaggggttctagaagaaacaacaatgccacaaagaagaaatgttaaacatttttcttaagact |
3651404 |
T |
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