View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12875_low_1 (Length: 245)

Name: NF12875_low_1
Description: NF12875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12875_low_1
NF12875_low_1
[»] chr4 (23 HSPs)
chr4 (2-195)||(53182246-53182439)
chr4 (2-231)||(33606061-33606305)
chr4 (2-156)||(36657591-36657759)
chr4 (19-117)||(16172705-16172803)
chr4 (4-195)||(34435355-34435554)
chr4 (2-117)||(28446386-28446501)
chr4 (22-224)||(8993751-8993968)
chr4 (22-224)||(13112529-13112746)
chr4 (22-224)||(46915330-46915547)
chr4 (22-111)||(2213136-2213225)
chr4 (22-224)||(3616105-3616322)
chr4 (177-225)||(53182382-53182430)
chr4 (145-195)||(2213435-2213485)
chr4 (114-224)||(3531223-3531333)
chr4 (145-195)||(46915630-46915680)
chr4 (114-195)||(16172815-16172896)
chr4 (170-231)||(46915614-46915677)
chr4 (184-231)||(2213435-2213482)
chr4 (114-195)||(2213243-2213323)
chr4 (22-111)||(3531116-3531205)
chr4 (138-231)||(16173046-16173139)
chr4 (138-195)||(33606058-33606115)
chr4 (170-231)||(16173039-16173100)
[»] chr6 (24 HSPs)
chr6 (2-231)||(24917419-24917663)
chr6 (2-226)||(18641268-18641507)
chr6 (19-226)||(8221159-8221395)
chr6 (19-111)||(24114234-24114326)
chr6 (22-224)||(633733-633950)
chr6 (22-224)||(6378283-6378500)
chr6 (22-224)||(17959151-17959368)
chr6 (22-224)||(34840474-34840691)
chr6 (138-231)||(8220870-8220963)
chr6 (140-231)||(633391-633484)
chr6 (140-231)||(633538-633631)
chr6 (140-231)||(633685-633778)
chr6 (140-231)||(6378455-6378548)
chr6 (140-231)||(6378602-6378695)
chr6 (138-231)||(8220909-8221002)
chr6 (138-195)||(24917609-24917666)
chr6 (145-195)||(633388-633438)
chr6 (145-195)||(633535-633585)
chr6 (145-195)||(633682-633732)
chr6 (145-195)||(6378501-6378551)
chr6 (145-195)||(6378648-6378698)
chr6 (138-195)||(8220867-8220924)
chr6 (165-231)||(8220948-8221014)
chr6 (173-231)||(24114153-24114211)
[»] scaffold0004 (3 HSPs)
scaffold0004 (2-231)||(104851-105095)
scaffold0004 (138-231)||(104812-104905)
scaffold0004 (145-195)||(104809-104859)
[»] chr7 (16 HSPs)
chr7 (4-231)||(26814141-26814383)
chr7 (2-231)||(32128062-32128306)
chr7 (19-195)||(22658941-22659132)
chr7 (22-224)||(22193279-22193496)
chr7 (138-231)||(32128252-32128345)
chr7 (22-224)||(36520495-36520712)
chr7 (140-231)||(22193084-22193177)
chr7 (140-231)||(22193231-22193324)
chr7 (145-195)||(22193081-22193131)
chr7 (145-195)||(22193228-22193278)
chr7 (164-219)||(22658552-22658607)
chr7 (138-226)||(22658626-22658714)
chr7 (140-191)||(22658622-22658673)
chr7 (145-195)||(26814138-26814188)
chr7 (145-195)||(32128298-32128348)
chr7 (138-231)||(22658660-22658753)
[»] chr1 (23 HSPs)
chr1 (2-195)||(33166299-33166507)
chr1 (2-195)||(47298366-47298574)
chr1 (2-192)||(38837506-38837708)
chr1 (19-226)||(8470311-8470533)
chr1 (2-195)||(17785358-17785566)
chr1 (2-189)||(51522343-51522545)
chr1 (2-195)||(17677128-17677337)
chr1 (19-187)||(18318623-18318805)
chr1 (19-111)||(48406521-48406613)
chr1 (22-224)||(31470251-31470468)
chr1 (22-224)||(45241103-45241320)
chr1 (22-224)||(48386036-48386253)
chr1 (138-231)||(8470267-8470360)
chr1 (22-224)||(2475980-2476197)
chr1 (145-195)||(31469999-31470049)
chr1 (184-231)||(31470002-31470049)
chr1 (145-231)||(31470164-31470250)
chr1 (114-195)||(48406422-48406503)
chr1 (138-213)||(8470246-8470321)
chr1 (177-231)||(8470345-8470399)
chr1 (177-231)||(33166302-33166356)
chr1 (177-231)||(47298517-47298571)
chr1 (177-226)||(18318756-18318805)
[»] chr8 (7 HSPs)
chr8 (2-195)||(30530444-30530652)
chr8 (1-195)||(17743686-17743895)
chr8 (19-195)||(15055641-15055832)
chr8 (19-195)||(27359167-27359358)
chr8 (19-195)||(27368524-27368715)
chr8 (22-224)||(1956140-1956357)
chr8 (173-223)||(17743697-17743747)
[»] scaffold1240 (1 HSPs)
scaffold1240 (2-195)||(528-736)
[»] chr3 (38 HSPs)
chr3 (77-195)||(51429024-51429141)
chr3 (2-194)||(33750676-33750885)
chr3 (2-195)||(26157919-26158127)
chr3 (4-180)||(50019126-50019317)
chr3 (2-82)||(33935415-33935495)
chr3 (22-231)||(47146329-47146553)
chr3 (19-111)||(42563103-42563195)
chr3 (22-224)||(17468479-17468696)
chr3 (22-224)||(25788561-25788778)
chr3 (22-224)||(25830518-25830735)
chr3 (22-224)||(42599216-42599433)
chr3 (2-58)||(51429136-51429192)
chr3 (22-224)||(10425513-10425730)
chr3 (22-224)||(30416317-30416534)
chr3 (19-97)||(21227304-21227382)
chr3 (117-195)||(33188922-33189000)
chr3 (140-231)||(25788733-25788826)
chr3 (140-231)||(25788880-25788973)
chr3 (140-231)||(25830690-25830783)
chr3 (140-231)||(25830837-25830930)
chr3 (22-224)||(6046189-6046406)
chr3 (19-97)||(21230380-21230458)
chr3 (145-195)||(25788779-25788829)
chr3 (145-195)||(25788926-25788976)
chr3 (145-195)||(25830736-25830786)
chr3 (145-195)||(25830883-25830933)
chr3 (145-195)||(47146039-47146089)
chr3 (145-195)||(47146205-47146255)
chr3 (186-231)||(51429027-51429072)
chr3 (138-226)||(42562741-42562829)
chr3 (184-231)||(47146042-47146089)
chr3 (184-231)||(47146208-47146255)
chr3 (177-231)||(26158070-26158124)
chr3 (149-231)||(42562775-42562857)
chr3 (145-231)||(42599434-42599520)
chr3 (117-180)||(21227206-21227269)
chr3 (114-193)||(42563006-42563085)
chr3 (145-231)||(42599553-42599639)
[»] chr2 (17 HSPs)
chr2 (2-195)||(31205770-31205979)
chr2 (4-189)||(31186056-31186255)
chr2 (32-195)||(40879701-40879877)
chr2 (2-117)||(4278259-4278372)
chr2 (22-224)||(9073773-9073990)
chr2 (22-224)||(12856942-12857159)
chr2 (22-224)||(30820470-30820687)
chr2 (22-195)||(8854091-8854279)
chr2 (22-224)||(7586390-7586607)
chr2 (140-231)||(12856894-12856987)
chr2 (145-195)||(8853929-8853979)
chr2 (145-231)||(9073991-9074077)
chr2 (145-195)||(12856891-12856941)
chr2 (184-231)||(8853932-8853979)
chr2 (173-226)||(31186201-31186253)
chr2 (177-231)||(40879820-40879874)
chr2 (138-194)||(9074023-9074079)
[»] chr5 (10 HSPs)
chr5 (19-195)||(29617379-29617570)
chr5 (19-195)||(30646715-30646905)
chr5 (22-224)||(4579072-4579289)
chr5 (22-224)||(27944619-27944836)
chr5 (22-224)||(32974211-32974428)
chr5 (22-195)||(40890819-40891007)
chr5 (159-231)||(27406276-27406348)
chr5 (138-226)||(29617719-29617806)
chr5 (164-231)||(29617706-29617773)
chr5 (145-231)||(4578983-4579071)
[»] scaffold0658 (1 HSPs)
scaffold0658 (114-191)||(7045-7121)
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-97)||(167191-167269)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 53182246 - 53182439
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53182246 aggagaaaaacagattgacgaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgaccggaaaaaagagctgttggaaaacttggtgcg 53182345  T
Q  102 tgagctgttttgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  53182346 tgagctgttttgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctaggtcccaatgtttactttaataattgtcagtattgtctag 53182439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 33606305 - 33606061
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||| ||||| | ||| ||||||||||||| ||||||||||| ||||||| |||||||||| |||||||| | |||| |||    
T  33606305 aggagaaaaacagattgaagaaattgaaactatatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagttgttggaagagttggagcg 33606206  T
Q  102 tgagctgttttgaaat---------------atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    ||||||||||||||||               ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||    
T  33606205 tgagctgttttgaaattaatttcaatcaaatatttgttggtattcggtcaaaattgtcagtgttgtctagttcccaatgtttactttaataattgttagt 33606106  T
Q  187 gttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||   |||||||||||||||||||||| ||||| ||||    
T  33606105 gttgtctagtctccaatgtttactttaataattgacagtgttgtc 33606061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 36657759 - 36657591
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||||||||  |||||| ||||||| ||||||| |||||||||| |||    
T  36657759 aggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcaatgacc-gaaaaaatagctgttagaaaacttggagcg 36657661  T
Q  102 tgagctgttt---------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctag 156  Q
    ||||||||||               | ||||||||||||||||| |||||||||||||||||||||||||    
T  36657660 tgagctgtttgaaaattaatttcaatcaaatatttgtttgtatttggtcaaaattgtcagtgttgtctag 36657591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 16172705 - 16172803
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttttgaaat 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||| ||| |||| ||||||||||||| |||||    
T  16172705 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgtttggaaat 16172803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 34435355 - 34435554
Alignment:
Q  4 gagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtg 103  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||       |||||| || |||| |||||||||| |||||||||| |||| |||||    
T  34435355 gagaaaaacaaattgaagaaaatgaaattgtatgtaaagttaagtt-------gcatctcgacgaccggaaaaaagagttgttggaaaagttggagcgtg 34435447  T
Q  104 agctgttttgaaat---------------atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgt 188  Q
    |||| |||||||||               |||||||||||||||||||||||||||| ||||||||||  || | ||||| ||||||||||| | |||||    
T  34435448 agctattttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtcaatgttgtctagtccctagtgtttgctttaataattgttagtgt 34435547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 28446501 - 28446386
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||||| | |||||||||||  |||||| ||| |||||| |||||||||| ||||||      
T  28446501 aggagaaaaacaaattaaagaaaatgaaattgtatgtaaagttaagtcccgaagagcatctcaatgaccggaagaaagagatgttggaaaagttggtgtt 28446402  T
Q  102 tgagctgttttgaaat 117  Q
    |||| |||||||||||    
T  28446401 tgagttgttttgaaat 28446386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 8993968 - 8993751
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  8993968 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 8993869  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  8993868 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 8993769  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  8993768 tgctttaataattatcag 8993751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 13112746 - 13112529
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  13112746 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 13112647  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  13112646 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 13112547  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  13112546 tgctttaataattatcag 13112529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 46915330 - 46915547
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||| | ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  46915330 aaaatgaaaatgtatctaaagttaagggacgaagagcatgtcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 46915429  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  46915430 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 46915529  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  46915530 tgctttaataattatcag 46915547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 2213136 - 2213225
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||    
T  2213136 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgttt 2213225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 3616105 - 3616322
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| ||||||| |||||              
T  3616105 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaat 3616204  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaa-tgtttactttaataattttcagtgttgtctaggtcccaatgt 205  Q
         | |||||||||||||||||| ||||| ||| |||||||||||||| |||||| ||||| |||||||| || ||||||||||||||  |  | |||    
T  3616205 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctag-tcccaactgtttgctttaatatttgtcagtgttgtctagtccgtagtgt 3616303  T
Q  206 ttactttaataattgtcag 224  Q
    || ||||||||||| ||||    
T  3616304 ttgctttaataattatcag 3616322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 53182382 - 53182430
Alignment:
Q  177 aattttcagtgttgtctaggtcccaatgtttactttaataattgtcagt 225  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  53182382 aattgtcagtgttgtctaggtcccaatgtttactttaataattgtcagt 53182430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 2213435 - 2213485
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  2213435 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 2213485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 3531223 - 3531333
Alignment:
Q  114 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttacttta 213  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||   | | ||||| |||||||| || ||||||||||||||  |  | ||||| |||||    
T  3531223 aaatatttgtttgtattcagtcaacattatcagtgttgtctagtctcgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtttgcttta 3531322  T
Q  214 ataattgtcag 224  Q
    |||||| ||||    
T  3531323 ataattatcag 3531333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 46915630 - 46915680
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  46915630 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 46915680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 16172815 - 16172896
Alignment:
Q  114 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    |||||||||||||||||| ||||||||| |||||||| |||||  || | ||||| |||||||| || ||||||||| ||||    
T  16172815 aaatatttgtttgtattcagtcaaaattatcagtgttatctagtcccgagtgtttgctttaatatttgtcagtgttgcctag 16172896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 46915614 - 46915677
Alignment:
Q  170 ctttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  46915614 ctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 46915677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 2213435 - 2213482
Alignment:
Q  184 agtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  2213435 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 2213482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 2213243 - 2213323
Alignment:
Q  114 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||| ||||||||||    
T  2213243 aaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtca-tgttgtctag 2213323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 3531116 - 3531205
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 111  Q
    |||||||||||||||||||||||||     ||||||||||| ||||||| ||| || ||||||||||  || |||| || ||||||||||    
T  3531116 aaaatgaaaatgtatctaaagttaaaggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcatgagctgttt 3531205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 16173046 - 16173139
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| ||||||||||||||  || | ||||| ||||||||||| ||||||||||||||  || | ||||| ||||||||| | |||||| ||||    
T  16173046 aattatcagtgttgtctagtcccgactgtttgctttaataattatcagtgttgtctagtcccgactgtttgctttaataaatatcagtgttgtc 16173139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 33606115 - 33606058
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    |||||| ||||||||||||   |||||||||||||||||||||  |||||||||||||    
T  33606115 aattgttagtgttgtctagtctccaatgtttactttaataattgacagtgttgtctag 33606058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 16173039 - 16173100
Alignment:
Q  170 ctttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||| ||||||||||||||  || | ||||| ||||||||||| |||||| ||||    
T  16173039 ctttaataattatcagtgttgtctagtcccgactgtttgctttaataattatcagtgttgtc 16173100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 24917419 - 24917663
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||  | |||| | |    
T  24917419 aggagaaaaacaaattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagagctgttggaggagttggagag 24917518  T
Q  102 tgagctgttttgaaat---------------atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    | ||||||||||||||               |||||||||| || |||||||||||||||||||||||||   |||||||||||||||||||||  ||||    
T  24917519 taagctgttttgaaattaatttcagtcaaatatttgtttgtgtttggtcaaaattgtcagtgttgtctagtatccaatgtttactttaataattgccagt 24917618  T
Q  187 gttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||    
T  24917619 gttgtctagtccccaatgtttactttaataattgtcagtgttgtc 24917663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 18641507 - 18641268
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||| ||| | |||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||  ||||||||| ||||||| || |||| |||    
T  18641507 aggagacaaatagattgaagaaaatgaaattgtatataaagttaagttccgaagagcatctcgatgaccgaaaaaaagagttgttggagaagttggagcg 18641408  T
Q  102 tgagctgttttgaaat---------------atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    ||||||||||||||||               ||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||||||||| ||| |    
T  18641407 tgagctgttttgaaattaatttcaatcaaatatttgtttgtattcgttcaaaattgtcagtgttgtctagtttccaatgtttagtttaataattgtcaat 18641308  T
Q  187 gttgtctaggtcccaatgtttactttaataattgtcagtg 226  Q
    ||||| |||    |||||||||||||||||||| ||||||    
T  18641307 gttgtttagtcttcaatgtttactttaataattatcagtg 18641268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 8221395 - 8221159
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||| ||| |||| |||||||||||||           
T  8221395 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgtttgaaaatt 8221296  T
Q  112 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctag-------------ctcccaa-tgtttactttaataattttcagtgtt 189  Q
            | |||||||||||||||||| ||||||||| ||||||||||||||              |||||| ||||||||||||||||| ||||||||    
T  8221295 aattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcccaagtgtctagtcccaagtgtttactttaataattatcagtgtt 8221196  T
Q  190 gtctaggtcccaatgtttactttaataattgtcagtg 226  Q
    |||||   |||| ||||| ||||||||||||||||||    
T  8221195 gtctaatccccagtgtttgctttaataattgtcagtg 8221159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 24114326 - 24114234
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 111  Q
    |||||||||||  || |||||||||||||||| ||||||||||| ||||||| ||| |||||| |||||||||| |||| |||||||||||||    
T  24114326 aagaaaatgaagttgcatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagttgttggaaaagttggagcgtgagctgttt 24114234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 633950 - 633733
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  633950 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 633851  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  633850 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 633751  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  633750 tgctttaataattatcag 633733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 6378283 - 6378500
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  6378283 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 6378382  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  6378383 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 6378482  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  6378483 tgctttaataattatcag 6378500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 17959151 - 17959368
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  17959151 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 17959250  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  17959251 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 17959350  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  17959351 tgctttaataattatcag 17959368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 34840691 - 34840474
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  34840691 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 34840592  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  34840591 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 34840492  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  34840491 tgctttaataattatcag 34840474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 8220963 - 8220870
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| ||||||||||||||  |||| ||||| ||||| ||||| ||||||||||||||  |||| ||||| |||||||||||||||||| ||||    
T  8220963 aattatcagtgttgtctagtccccagtgtttgctttagtaattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtc 8220870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 633484 - 633391
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  633484 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 633391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 633631 - 633538
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  633631 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 633538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 633778 - 633685
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  633778 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 633685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 6378455 - 6378548
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  6378455 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 6378548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 6378602 - 6378695
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  6378602 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 6378695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 8221002 - 8220909
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| |||||||| |||||  |||| ||||| ||||||||||| ||||||||||||||  |||| ||||| ||||| |||||||||||| ||||    
T  8221002 aattatcagtgttctctagtccccagtgtttgctttaataattatcagtgttgtctagtccccagtgtttgctttagtaattgtcagtgttgtc 8220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 24917609 - 24917666
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  24917609 aattgccagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 24917666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 633438 - 633388
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  633438 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 633388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 633585 - 633535
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  633585 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 633535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 633732 - 633682
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  633732 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 633682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 6378501 - 6378551
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  6378501 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 6378551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 6378648 - 6378698
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  6378648 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 6378698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 8220924 - 8220867
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    |||||||||||||||||||  |||| ||||| ||||||||||| ||||||||||||||    
T  8220924 aattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtctag 8220867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 8221014 - 8220948
Alignment:
Q  165 gtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| ||||||||||| |||||||| |||||  |||| ||||| ||||||||||| |||||| ||||    
T  8221014 gtttgctttaataattatcagtgttctctagtccccagtgtttgctttaataattatcagtgttgtc 8220948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 24114211 - 24114153
Alignment:
Q  173 taataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||| ||||||||||||||  ||||  |||| |||||||||||||||||| ||||    
T  24114211 taataattgtcagtgttgtctagtccccacagtttgctttaataattgtcagtggtgtc 24114153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 105095 - 104851
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||| || ||||||  | |||| | |    
T  105095 aggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgcggttggaggagttggagtg 104996  T
Q  102 tgagctgttttgaaat---------------atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    ||||||||||||||||               ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||    
T  104995 tgagctgttttgaaattaatttcagtcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagttcccaatgtttattttaataattgtcagt 104896  T
Q  187 gttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||   |||||||||||||||||||| ||| |||| ||||    
T  104895 gttgtctaatccccaatgtttactttaataagtgttagtgttgtc 104851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 104905 - 104812
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||||||||   |||||||||||||||||||| | | ||||||||||||  |||||||||||||||||||| |||||||| ||||    
T  104905 aattgtcagtgttgtctaatccccaatgtttactttaataagtgttagtgttgtctagtccccaatgtttactttaataaatgtcagtgttgtc 104812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 104859 - 104809
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||| | ||||||||||||||    
T  104859 agtgttgtctagtccccaatgtttactttaataaatgtcagtgttgtctag 104809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 26814383 - 26814141
Alignment:
Q  4 gagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtg 103  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||  | |||| |||||    
T  26814383 gagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgctgttggaggagttggagcgtg 26814284  T
Q  104 agctgttttgaaat---------------atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgt 188  Q
    ||||||||||||||               ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||| | | |||||    
T  26814283 agctgttttgaaattaatttcagtcaaatatttgtttgtatttggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgttagtgt 26814184  T
Q  189 tgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||   ||||||||||||||||||| |||||||| ||||    
T  26814183 tgtctagtctccaatgtttactttaataaatgtcagtgttgtc 26814141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 32128062 - 32128306
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||| | |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||| | |||||||  | |||| |||    
T  32128062 aggagaaaaaaagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgttgttggaggagttggagcg 32128161  T
Q  102 tgagctgttttgaaat---------------atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    ||||||||||||||||               ||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||||||| |||||    
T  32128162 tgagctgttttgaaattaatttcagtcaaatatttgtttgtattcggtcaaaattgccagtgttgtctagtttccaatgtttattttaataattgtcagt 32128261  T
Q  187 gttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||  | |||||||||||||||||| ||| |||| ||||    
T  32128262 gttgtctagtcctcaatgtttactttaataagtgttagtgttgtc 32128306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 22659132 - 22658941
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 111  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||| |||||||||||||     |||| |||||||||||||           
T  22659132 aagaaaatgaaaatgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaagagctgttggggctgttggagcgtgagctgtttgaaaatt 22659033  T
Q  112 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
            | |||||||||||||||||| ||||||||| ||||||||||||||   | | ||||| |||||||| || ||||||||||||||    
T  22659032 aattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtctcgagtgtttgctttaatatttgtcagtgttgtctag 22658941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 22193496 - 22193279
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  22193496 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 22193397  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  22193396 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 22193297  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  22193296 tgctttaataattatcag 22193279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 32128252 - 32128345
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||||  | |||||||||||||||||| | | ||||||||||||  || ||||||||||||||||| |||||||| ||||    
T  32128252 aattgtcagtgttgtctagtcctcaatgtttactttaataagtgttagtgttgtctagtccctaatgtttactttaataaatgtcagtgttgtc 32128345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 36520712 - 36520495
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  36520712 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 36520613  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  36520612 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 36520513  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  36520512 tgctttaataattatcag 36520495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 22193177 - 22193084
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  22193177 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 22193084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 22193324 - 22193231
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  22193324 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 22193231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 22193131 - 22193081
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  22193131 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 22193081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 22193278 - 22193228
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  22193278 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 22193228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 22658607 - 22658552
Alignment:
Q  164 tgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataatt 219  Q
    ||||| ||||||||||| ||||||||||||||  |||| |||||||||||||||||    
T  22658607 tgtttgctttaataattatcagtgttgtctagtccccactgtttactttaataatt 22658552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 22658714 - 22658626
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtg 226  Q
    |||| ||||||||||||||  || | | ||| |||||||| || ||||||||||||||  |||| ||||| ||||||||||| ||||||    
T  22658714 aattatcagtgttgtctagtcccgactatttgctttaatatttgtcagtgttgtctagtccccactgtttgctttaataattatcagtg 22658626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 22658673 - 22658622
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgt 191  Q
    |||||||||||||||||  |||| ||||| ||||||||||| ||||||||||    
T  22658673 ttgtcagtgttgtctagtccccactgtttgctttaataattatcagtgttgt 22658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 26814188 - 26814138
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||   ||||||||||||||||||| | ||||||||||||||    
T  26814188 agtgttgtctagtctccaatgtttactttaataaatgtcagtgttgtctag 26814138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 32128298 - 32128348
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  || ||||||||||||||||| | ||||||||||||||    
T  32128298 agtgttgtctagtccctaatgtttactttaataaatgtcagtgttgtctag 32128348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 22658753 - 22658660
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| ||||||||||||||  |  | ||||| ||||||||||| ||||||||||||||  || | | ||| |||||||| ||||||||| ||||    
T  22658753 aattatcagtgttgtctagtcctgactgtttgctttaataattatcagtgttgtctagtcccgactatttgctttaatatttgtcagtgttgtc 22658660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 33166507 - 33166299
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||| |||    
T  33166507 aggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagaatcttgatgaccggaaaaaagagctgttggaaaagttggagcg 33166408  T
Q  102 tgagctgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    ||||||||||||               |||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||| |||||    
T  33166407 tgagctgttttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagtctccaatttttactttaataattgtcagt 33166308  T
Q  187 gttgtctag 195  Q
    |||||||||    
T  33166307 gttgtctag 33166299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 47298366 - 47298574
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||| |||| |||    
T  47298366 aggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagtatctcgatgaccggaaaaaagagctgttggaaaagttggagcg 47298465  T
Q  102 tgagctgttttga---------------aatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    |||||||||||||               |||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||| |||||    
T  47298466 tgagctgttttgaaattaattgcaatccaatatttgtttgtattcggtcaaaattgtcagtgttgtttagaccccaatgtttgctttaataattgtcagt 47298565  T
Q  187 gttgtctag 195  Q
    |||||||||    
T  47298566 gttgtctag 47298574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 38837506 - 38837708
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||| ||| ||||||||||| ||||||| |||||||||| |||||||||| |||| |||    
T  38837506 aggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaaattccgaagagcatctcgatgaccggaaaaaagagttgttggaaaagttggagcg 38837605  T
Q  102 tgagctgttttga------------aatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgtt 189  Q
    |||||||||||||            |||||||||||||||||||||||||||||| |||||||| ||  | || ||||| ||||||||||| ||||||||    
T  38837606 tgagctgttttgaaaattgcaatccaatatttgtttgtattcggtcaaaattgtcggtgttgtcaagacctcagtgtttgctttaataattgtcagtgtt 38837705  T
Q  190 gtc 192  Q
    |||    
T  38837706 gtc 38837708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 8470533 - 8470311
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||  |||||||||||| ||| |||| || ||||||||||           
T  8470533 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagtaagagctgttgggaaagttggagcttgagctgtttaaaagtt 8470434  T
Q  112 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaat 203  Q
            | |||||||||||||||||| ||||||||| ||||||||||||||  |||||||||| ||||||||||| ||||||||||||||  |||| |    
T  8470433 aattttaattaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccccaatgtttgctttaataattatcagtgttgtctagtccccagt 8470334  T
Q  204 gtttactttaataattgtcagtg 226  Q
    |||| ||||||||||| ||||||    
T  8470333 gtttgctttaataattatcagtg 8470311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 17785566 - 17785358
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||  ||||||||||||  |||||||||||| |||    
T  17785566 aggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagctactggaaaacttggagcg 17785467  T
Q  102 tgagctgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    ||||||||||||               ||||| |||||||||||||||||||||||||||||||||||||   | | ||||| ||||||||||| | |||    
T  17785466 tgagctgttttgaaattaatttcaatcaaataattgtttgtattcggtcaaaattgtcagtgttgtctagtctctagtgtttgctttaataattattagt 17785367  T
Q  187 gttgtctag 195  Q
    |||||||||    
T  17785366 gttgtctag 17785358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 51522545 - 51522343
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||||||| ||||||| || | ||||| ||||||||||||| ||||||||||| ||||||| ||| |||| |||||||||||| |||| |||    
T  51522545 aggagaaaaacaaattaaagaaaaggacattgtatgtaaagttaagttccgaagagcatctcgatgaccggaagaaagtgctgttggaaaagttggagcg 51522446  T
Q  102 tgagctgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    ||||||||||||               |||||||||||||||||||||||||||||||||||||||||||    || ||||| ||||||||||| |||||    
T  51522445 tgagctgttttgaaattaatttcactcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagtctacagtgtttgctttaataattgtcagt 51522346  T
Q  187 gtt 189  Q
    |||    
T  51522345 gtt 51522343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 17677128 - 17677337
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacc-tgaaaaaagagctgttggaaaacttggtgc 100  Q
    |||||||||||| | |||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||  ||||||||||||||||||||| |||| ||    
T  17677128 aggagaaaaacagaatgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaaagagctgttggaaaagttggagc 17677227  T
Q  101 gtgagctgttttga---------------aatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcag 185  Q
    ||||||| ||||||               ||||||||||||||||||||||||||||||||||||||||||  |  | |||||  |||||||||| |||     
T  17677228 gtgagctattttgaaattaattgcaatccaatatttgtttgtattcggtcaaaattgtcagtgttgtctagaccttagtgtttgttttaataattgtcaa 17677327  T
Q  186 tgttgtctag 195  Q
    ||||||||||    
T  17677328 tgttgtctag 17677337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 18318623 - 18318805
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 111  Q
    |||||||||||| |||||||||||||| |||| ||||||||||| ||||||| ||| |||||||| |||||||| |||| ||||||||| |||           
T  18318623 aagaaaatgaaactgtatctaaagtta-gttccgaagagcatctcgatgaccggaagaaagagctattggaaaagttggagcgtgagctatttgaaaatt 18318721  T
Q  112 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtg 187  Q
            | ||||||||||||||||||||| |||||||||||||||||||||  |||| ||||| ||||||||||| ||||||    
T  18318722 aatttcaatcaaatatttgtttgtattcggttaaaattgtcagtgttgtctagtccccactgtttgctttaataattgtcagtg 18318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 48406613 - 48406521
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||  || |||||| ||||||  || |||| |||||||||||||    
T  48406613 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccgaaagaaagagttgttggggaagttggagcgtgagctgttt 48406521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 31470468 - 31470251
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  31470468 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 31470369  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  31470368 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 31470269  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  31470268 tgctttaataattatcag 31470251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 45241320 - 45241103
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  45241320 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 45241221  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  45241220 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 45241121  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  45241120 tgctttaataattatcag 45241103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 48386036 - 48386253
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  48386036 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 48386135  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  48386136 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 48386235  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  48386236 tgctttaataattatcag 48386253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 8470360 - 8470267
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| ||||||||||||||  |||| ||||| ||||||||||| |||||||||| |||  |||| ||||| |||||||||||||||||| ||||    
T  8470360 aattatcagtgttgtctagtccccagtgtttgctttaataattatcagtgttgtttagtccccagtgtttgctttaataattgtcagtgttgtc 8470267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 2475980 - 2476197
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| ||||||| |||||              
T  2475980 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaat 2476079  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaa-tgtttactttaataattttcagtgttgtctaggtcccaatgt 205  Q
         | |||||||||||||||||| ||||| ||| |||||||||||||| |||||| ||||| |||||||| || ||||||||||||||  |  | |||    
T  2476080 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctag-tcccaactgtttgctttaatatttgtcagtgttgtctagtccgtagtgt 2476178  T
Q  206 ttactttaataattgtcag 224  Q
    || ||||||||||| ||||    
T  2476179 ttgctttaataattatcag 2476197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 31470049 - 31469999
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  31470049 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 31469999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 31470049 - 31470002
Alignment:
Q  184 agtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  31470049 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 31470002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 31470250 - 31470164
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||  | || ||||| ||||||||||| ||||||||||||||  || | ||||| |||||||| ||||||||| ||||    
T  31470250 agtgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 31470164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 48406503 - 48406422
Alignment:
Q  114 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    |||||||||||| ||||| ||||||||| ||||||||||||||  || | ||||| |||||||| || ||||| || |||||    
T  48406503 aaatatttgtttatattcagtcaaaattatcagtgttgtctagtcccgagtgtttgctttaatatttgtcagtattatctag 48406422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 8470321 - 8470246
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttacttta 213  Q
    |||| |||||||||| |||  |||| ||||| ||||||||||| ||||||||||||||  || ||||||| |||||    
T  8470321 aattatcagtgttgtttagtccccagtgtttgctttaataattgtcagtgttgtctagtccctaatgtttgcttta 8470246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 8470399 - 8470345
Alignment:
Q  177 aattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| ||||||||||||||  |||||||||| ||||||||||| |||||| ||||    
T  8470399 aattatcagtgttgtctagtccccaatgtttgctttaataattatcagtgttgtc 8470345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 33166356 - 33166302
Alignment:
Q  177 aattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| ||||||||||||||   ||||| |||||||||||||||||||||| ||||    
T  33166356 aattgtcagtgttgtctagtctccaatttttactttaataattgtcagtgttgtc 33166302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 47298517 - 47298571
Alignment:
Q  177 aattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| |||||||||| |||  |||||||||| |||||||||||||||||| ||||    
T  47298517 aattgtcagtgttgtttagaccccaatgtttgctttaataattgtcagtgttgtc 47298571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 18318756 - 18318805
Alignment:
Q  177 aattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtg 226  Q
    |||| ||||||||||||||  |||| ||||| ||||||||||||||||||    
T  18318756 aattgtcagtgttgtctagtccccactgtttgctttaataattgtcagtg 18318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 30530444 - 30530652
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||| |||| |||    
T  30530444 aggagaaaaacagattgaagaaaatgaaattgtatgtaaagttaagttccaaagagcatctcgatgaccggaaaaaagagctgttggaaaagttggagcg 30530543  T
Q  102 tgagctgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    ||||||||||||               |||||||||||||||||||||||||||||||||||||||||||  || |  |||||||||||||||| |||||    
T  30530544 tgagctgttttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagtcccgagcgtttactttaataattgtcagt 30530643  T
Q  187 gttgtctag 195  Q
    |||||||||    
T  30530644 gttgtctag 30530652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 17743895 - 17743686
Alignment:
Q  1 taggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgc 100  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||| ||||||||||  |||||||||||||| ||    
T  17743895 taggagaaaaacagattgaagaaaatgaaattgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagacgttggaaaacttggagc 17743796  T
Q  101 gtgagctgttt---------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcag 185  Q
    |||||||||||               | || |||||||||||||||||| | |||||||||||||||||||  |||| ||||| ||||||||||| |||     
T  17743795 gtgagctgtttgcaaattaatttcaatcaactatttgtttgtattcggtaataattgtcagtgttgtctagtccccagtgtttgctttaataattgtcaa 17743696  T
Q  186 tgttgtctag 195  Q
    ||||||||||    
T  17743695 tgttgtctag 17743686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 15055832 - 15055641
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||           
T  15055832 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgtttgaaaatt 15055733  T
Q  112 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
            | |||||||||||||||||| ||||||||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||    
T  15055732 aattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctag 15055641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 27359358 - 27359167
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| ||  || |||||| |||||||||| |||| |||||||||||||           
T  27359358 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaaagttggagcgtgagctgtttggaaatt 27359259  T
Q  112 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
            | |||||||||||||||||||||||||||||| | |||||||||   |||| ||||| ||||||||||| ||| ||||||||||    
T  27359258 aatttcaatcaaatatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaataattgtcaatgttgtctag 27359167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 27368715 - 27368524
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| ||  || |||||| |||||||||| |||| |||||||||||||           
T  27368715 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaaagttggagcgtgagctgtttggaaatt 27368616  T
Q  112 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
            | |||||||||||||||||||||||||||||| | |||||||||   |||| ||||| ||||||||||| ||| ||||||||||    
T  27368615 aatttcaatcaaatatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaataattgtcaatgttgtctag 27368524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 1956140 - 1956357
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  1956140 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 1956239  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  1956240 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 1956339  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  1956340 tgctttaataattatcag 1956357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 17743747 - 17743697
Alignment:
Q  173 taataattttcagtgttgtctaggtcccaatgtttactttaataattgtca 223  Q
    |||||||| ||||||||||||||  |||| ||||| |||||||||||||||    
T  17743747 taataattgtcagtgttgtctagtccccagtgtttgctttaataattgtca 17743697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 528 - 736
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||||| |||    
T  528 aggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaagagctgttggaaaacttggagcg 627  T
Q  102 tgagctgttt---------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    ||||||||||               | ||||| ||||||||||||||||||||||||||||||||| |||  |||| ||||| ||||||||||| |||||    
T  628 tgagctgtttggaaattaatttcaatcaaataattgtttgtattcggtcaaaattgtcagtgttgtatagtccccagtgtttgctttaataattgtcagt 727  T
Q  187 gttgtctag 195  Q
    |||||||||    
T  728 gttgtctag 736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 195
Target Start/End: Complemental strand, 51429141 - 51429024
Alignment:
Q  77 aagagctgttggaaaacttggtgcgtgagctgttttgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaat 176  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  51429141 aagagctgttggaaaacttggagcgtgagctgttttgaaaaatttgtttgtattcggtcaaaattgtca-tgttgtctagttcccaatgtttactttaat 51429043  T
Q  177 aattttcagtgttgtctag 195  Q
    |||| ||||||||||||||    
T  51429042 aattgtcagtgttgtctag 51429024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 33750885 - 33750676
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||| |||||||||| ||||||||||||||| |||    
T  33750885 aggagaaaaacagattgaagaaaatgaaattgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagaggtgttggaaaacttggagcg 33750786  T
Q  102 tgagctgttt---------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataat--tttca 184  Q
    |||||| |||               | ||||| |||||||||||||||||||||||||||||||||||||  |||| ||||| ||||||||||  |||||    
T  33750785 tgagctttttggaaattaatttcaatcaaataattgtttgtattcggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtttca 33750686  T
Q  185 gtgttgtcta 194  Q
    ||||||||||    
T  33750685 gtgttgtcta 33750676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 26157919 - 26158127
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||  | |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||| | |||||||  | ||||| ||    
T  26157919 aggagaaaattagattgaagaaaatgaaactgtatgtaaagttaagttctgaagagcatcttgatgaccgaaaaaaagcgttgttggaggagttggtacg 26158018  T
Q  102 tgagctgttttgaaat---------------atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagt 186  Q
    |||| |||||||||||               ||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| | |||||    
T  26158019 tgagttgttttgaaattaatttcagtcaaatatttggttgtattcggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgtcagt 26158118  T
Q  187 gttgtctag 195  Q
    |||||||||    
T  26158119 gttgtctag 26158127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 50019317 - 50019126
Alignment:
Q  4 gagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtg 103  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||  |||||||||| ||||||||||||||| |||||    
T  50019317 gagaaaaacatattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagttgttggaaaacttggagcgtg 50019218  T
Q  104 agctgttt---------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataatt 180  Q
    ||||||||               | ||||||||||||||||||| |||||||||| ||||||||||||  |||| ||||| |||||||||||    
T  50019217 agctgtttggaaattaatttcaatcaaatatttgtttgtattcgatcaaaattgttagtgttgtctagtccccagtgtttgctttaataatt 50019126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 33935495 - 33935415
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagc 82  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33935495 aggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgaccggaaaaaagagc 33935415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 47146553 - 47146329
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  47146553 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 47146454  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  47146453 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 47146354  T
Q  207 tactttaataattgtcagtgatgtc 231  Q
    | |||||||| ||||||||| ||||    
T  47146353 tgctttaatatttgtcagtgttgtc 47146329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 42563195 - 42563103
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 111  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||    
T  42563195 aagaaaatgaaaatgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgttt 42563103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 17468696 - 17468479
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  17468696 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 17468597  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  17468596 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 17468497  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  17468496 tgctttaataattatcag 17468479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 25788561 - 25788778
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  25788561 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 25788660  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  25788661 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 25788760  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  25788761 tgctttaataattatcag 25788778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 25830518 - 25830735
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  25830518 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 25830617  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  25830618 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 25830717  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  25830718 tgctttaataattatcag 25830735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 42599216 - 42599433
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  42599216 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 42599315  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  42599316 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 42599415  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  42599416 tgctttaataattatcag 42599433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 51429192 - 51429136
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagc 58  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  51429192 aggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaacttctgaagagc 51429136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 10425513 - 10425730
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  10425513 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccagaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 10425612  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  10425613 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 10425712  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  10425713 tgctttaataattatcag 10425730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 30416317 - 30416534
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  30416317 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 30416416  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  30416417 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 30416516  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  30416517 tgctttaataattatcag 30416534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 21227382 - 21227304
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttgg 97  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||||| ||| |||||| |||||| ||| ||||    
T  21227382 aagaaaatgaaaatgtatctaaagctaagttctaaagagcatctcgatgaccggaagaaagagatgttgggaaagttgg 21227304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 33188922 - 33189000
Alignment:
Q  117 tatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||||||||||||||||| ||||||||||||  | || |||||  |||||||||| ||||||||||||||    
T  33188922 tatttgtttgtattcggtcaaaattgttagtgttgtctagacctcagtgtttgttttaataattgtcagtgttgtctag 33189000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 25788733 - 25788826
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  25788733 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 25788826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 25788880 - 25788973
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  25788880 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 25788973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 25830690 - 25830783
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  25830690 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 25830783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 25830837 - 25830930
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  25830837 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 25830930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 6046189 - 6046406
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    |||||||||||||||||||||||||     ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  6046189 aaaatgaaaatgtatctaaagttaaaggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 6046288  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  |  | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  6046289 tttaatcaaatatttgtttgtattccgtcaacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 6046388  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  6046389 tgctttaataattatcag 6046406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 21230380 - 21230458
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttgg 97  Q
    |||||||||||||||||| ||||| |||||||  |||||||||| ||||||| ||| |||||  |||||||||| ||||    
T  21230380 aagaaaatgaaaatgtatataaagataagttccaaagagcatctcgatgaccagaagaaagatatgttggaaaagttgg 21230458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 25788779 - 25788829
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  25788779 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 25788829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 25788926 - 25788976
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  25788926 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 25788976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 25830736 - 25830786
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  25830736 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 25830786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 25830883 - 25830933
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  25830883 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 25830933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 47146089 - 47146039
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  47146089 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 47146039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 47146255 - 47146205
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  47146255 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 47146205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 51429072 - 51429027
Alignment:
Q  186 tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  51429072 tgttgtctagttcccaatgtttactttaataattgtcagtgttgtc 51429027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 42562829 - 42562741
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtg 226  Q
    |||| ||||||||||||||  | || ||||| ||||||||||| ||||||||||||||  | || ||||| ||||||||||| ||||||    
T  42562829 aattatcagtgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtccacactgtttgctttaataattatcagtg 42562741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 47146089 - 47146042
Alignment:
Q  184 agtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  47146089 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 47146042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 47146255 - 47146208
Alignment:
Q  184 agtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  47146255 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 47146208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 26158070 - 26158124
Alignment:
Q  177 aattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| ||||||||||||||  |||||||||||||||||||| |||||||| ||||    
T  26158070 aattgtcagtgttgtctagtccccaatgtttactttaataagtgtcagtgttgtc 26158124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 42562857 - 42562775
Alignment:
Q  149 ttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||| | || ||||| ||||||||||| ||||||||||||||  | || ||||| ||||||||||| |||||| ||||    
T  42562857 ttgtctagccctcattgtttgctttaataattatcagtgttgtctagtcctcactgtttgctttaataattatcagtgttgtc 42562775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 42599434 - 42599520
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||  | || ||||| ||||||||||| ||||||||||||||  || | ||||| |||||||| ||||||||| ||||    
T  42599434 agtgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 42599520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 21227269 - 21227206
Alignment:
Q  117 tatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataatt 180  Q
    |||||||||||||||||||||| ||| |||||||||| ||  |||  ||||| |||||||||||    
T  21227269 tatttgtttgtattcggtcaaacttggcagtgttgtcaagtccccggtgtttgctttaataatt 21227206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 42563085 - 42563006
Alignment:
Q  114 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtct 193  Q
    |||||||||||||||||| ||||| ||| | ||||||||||||  ||   ||||| |||||||| || ||||||||||||    
T  42563085 aaatatttgtttgtattcagtcaacattattagtgttgtctagtcccgtctgtttgctttaatatttgtcagtgttgtct 42563006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 42599553 - 42599639
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||  | || ||||| ||||||||||| || |||||||||||  || | ||||| |||||||| ||||||||| ||||    
T  42599553 agtgttgtctagtcctcactgtttgctttaataattatcggtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 42599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 31205770 - 31205979
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||  |||| ||||||| |||||||||| |||||||||||||||   |    
T  31205770 aggagaaaaacagattgaagaaaatgaaactgtatgtaatgttaagttctgaagaatatctcgatgaccggaaaaaagagatgttggaaaacttggaatg 31205869  T
Q  102 tgagctgttt---------------tgaaatatttgtttgtattcggtcaaaattgtcagtg-ttgtctagctcccaatgtttactttaataattttcag 185  Q
    ||||||||||               | ||||||||||||||||||||| | ||||||||||| ||||||||  |||| ||||| ||||||||||| | ||    
T  31205870 tgagctgtttgaaaattaatttcaatcaaatatttgtttgtattcggtaataattgtcagtgtttgtctagtccccagtgtttgctttaataattgttag 31205969  T
Q  186 tgttgtctag 195  Q
    ||||||||||    
T  31205970 tgttgtctag 31205979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 31186056 - 31186255
Alignment:
Q  4 gagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtg 103  Q
    |||||| ||| |||||||||||||||| ||||| ||| ||||||||| | ||| ||||| ||||||| |||||||||| |||||||||||||||  ||||    
T  31186056 gagaaatacagattgaagaaaatgaaactgtatgtaatgttaagttccggagaacatctcgatgaccggaaaaaagagatgttggaaaacttggaacgtg 31186155  T
Q  104 agctgttt---------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgt 188  Q
    ||||||||               | ||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  31186156 agctgtttgaaaattaatttcaatcaaatatttgtttgtattcggtaataattgtcagtgttgtctag-tcccagtgttttctttaataattgtcagtgt 31186254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 40879701 - 40879877
Alignment:
Q  32 tgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttttgaaat-------------- 117  Q
    ||||| |||||||||||||  |||||||||| ||||| | |||||| |||||||||||||| |||| |||||||||||||||||||                  
T  40879701 tgtatgtaaagttaagttccaaagagcatctcgatgatcggaaaaaggagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 40879800  T
Q  118 -atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
     ||||||||||  |||||||||||||||||||||||||||  |||| ||||| ||||||||||| ||||||||||||||    
T  40879801 tatttgtttgt--tcggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtctag 40879877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 4278372 - 4278259
Alignment:
Q  2 aggagaaaaacaaattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcg 101  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||   ||||| ||||||||||| | |||| |||    
T  4278372 aggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagtttcgaagagcatctcgatgacc--gaaaaatagctgttggaagagttggagcg 4278275  T
Q  102 tgagctgttttgaaat 117  Q
    |||||||||| |||||    
T  4278274 tgagctgtttggaaat 4278259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 9073773 - 9073990
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  9073773 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 9073872  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  9073873 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 9073972  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  9073973 tgctttaataattatcag 9073990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 12857159 - 12856942
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  12857159 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 12857060  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  12857059 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 12856960  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  12856959 tgctttaataattatcag 12856942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 30820470 - 30820687
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  30820470 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 30820569  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  30820570 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 30820669  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  30820670 tgctttaataattatcag 30820687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 8854279 - 8854091
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  8854279 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 8854180  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||||||| ||| ||||||||||||||    
T  8854179 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatcattgtcagtgttgtctag 8854091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 7586390 - 7586607
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  7586390 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 7586489  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  7586490 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 7586589  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  7586590 tgctttaataattatcag 7586607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 12856987 - 12856894
Alignment:
Q  140 ttgtcagtgttgtctagctcccaatgtttactttaataattttcag--tgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||||||||||||||||  |  | ||||| ||||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  12856987 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 12856894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 8853979 - 8853929
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  8853979 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 8853929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 9073991 - 9074077
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||  | || ||||| ||||||||||| |||||||||||||| ||| | ||||| |||||||| ||||||||| ||||    
T  9073991 agtgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagttccgactgtttgctttaatatttgtcagtgttgtc 9074077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 12856941 - 12856891
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  12856941 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 12856891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 8853979 - 8853932
Alignment:
Q  184 agtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  8853979 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 8853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 31186201 - 31186253
Alignment:
Q  173 taataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtg 226  Q
    |||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||    
T  31186201 taataattgtcagtgttgtctag-tcccagtgttttctttaataattgtcagtg 31186253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 40879820 - 40879874
Alignment:
Q  177 aattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| ||||||||||||||  |||| ||||| |||||||||||||||||| ||||    
T  40879820 aattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtc 40879874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 9074023 - 9074079
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtcta 194  Q
    |||| |||||||||||||| ||| | ||||| |||||||| || |||||||||||||    
T  9074023 aattatcagtgttgtctagttccgactgtttgctttaatatttgtcagtgttgtcta 9074079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 29617379 - 29617570
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||  || |||| |||||||||||||           
T  29617379 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatctcgatgaccgaaagaaagagctgttggggaagttggagcgtgagctgtttgaaaatt 29617478  T
Q  112 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
            | |||||||||||||||||  ||||||||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||    
T  29617479 aattttaatcaaatatttgtttgtatttagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctag 29617570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 30646715 - 30646905
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 111  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||||||  |  ||||||||||||||||| |||| |||||||||||||           
T  30646715 aagaaaatgaaa-tgtatctaaagttaagttatgaagagcatctcgatgaccgaatgaaagagctgttggaaaagttggagcgtgagctgtttgaaaatt 30646813  T
Q  112 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
            | |||||||||||||||||| ||||||||| ||||||||||||||   | | ||||| |||||||| || ||||||||||||||    
T  30646814 aattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcacgagtgtttgctttaatatttgtcagtgttgtctag 30646905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 4579289 - 4579072
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  4579289 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 4579190  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  4579189 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 4579090  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  4579089 tgctttaataattatcag 4579072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 27944836 - 27944619
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  27944836 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 27944737  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| |||||| ||||||| ||| | ||||| |||||||| || ||||||||||||||  |  | ||||    
T  27944736 tttaatcaaatatttgtttgtattcagtcaacattatcagtgctgtctagttccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 27944637  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  27944636 tgctttaataattatcag 27944619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 32974211 - 32974428
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  32974211 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 32974310  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtt 206  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | | ||| |||||||| || ||||||||||||||  |  | ||||    
T  32974311 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactatttgctttaatatttgtcagtgttgtctagtccgtagtgtt 32974410  T
Q  207 tactttaataattgtcag 224  Q
    | ||||||||||| ||||    
T  32974411 tgctttaataattatcag 32974428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 40891007 - 40890819
Alignment:
Q  22 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 111  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  40891007 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 40890908  T
Q  112 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctag 195  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  |  | ||||| |||||||| || ||||||||||||||    
T  40890907 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctag 40890819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 27406276 - 27406348
Alignment:
Q  159 cccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    |||| ||||| ||||||||||| ||||||||||||||  ||   ||||| |||||||||||||||||| ||||    
T  27406276 cccagtgtttgctttaataattatcagtgttgtctagtccctggtgtttgctttaataattgtcagtgttgtc 27406348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 29617719 - 29617806
Alignment:
Q  138 aattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtg 226  Q
    |||| ||||||||||||||  || | ||||| ||||||||||| |||||||||||||   |||| ||||| ||||||||||| ||||||    
T  29617719 aattatcagtgttgtctagtcccgactgtttgctttaataattatcagtgttgtcta-tccccactgtttgctttaataattatcagtg 29617806  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 29617706 - 29617773
Alignment:
Q  164 tgtttactttaataattttcagtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||| ||||||||||| ||||||||||||||  || | ||||| ||||||||||| |||||| ||||    
T  29617706 tgtttgctttaataattatcagtgttgtctagtcccgactgtttgctttaataattatcagtgttgtc 29617773  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 4579071 - 4578983
Alignment:
Q  145 agtgttgtctagctcccaatgtttactttaataattttc--agtgttgtctaggtcccaatgtttactttaataattgtcagtgatgtc 231  Q
    ||||||||||||  | || ||||| ||||||||||| ||  ||| ||||||||  |||||||||| |||||||| ||||||||| ||||    
T  4579071 agtgttgtctagtcctcactgtttgctttaataattatcagagttttgtctagtccccaatgtttgctttaatatttgtcagtgttgtc 4578983  T

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Target: scaffold0658 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 7045 - 7121
Alignment:
Q  114 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttactttaataattttcagtgttgt 191  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  |||| ||||| ||||||||||| ||| ||||||    
T  7045 aaatagttgtttgtat-cggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtcaatgttgt 7121  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 167191 - 167269
Alignment:
Q  19 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttgg 97  Q
    |||||||||||||||||| ||||| |||||||||| |||||| | ||||||| ||| ||| || |||||||||| ||||    
T  167191 aagaaaatgaaaatgtatataaagctaagttctgaggagcatttcgatgaccggaagaaaaagttgttggaaaagttgg 167269  T

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