View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12876_low_1 (Length: 513)
Name: NF12876_low_1
Description: NF12876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12876_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 36457646 - 36457142
Alignment:
| Q |
1 |
atgctgcagcagatgaaccacaggatctacatgagttacaattgatactccaatccactgataaaactccaaacaaaccactaaacttcactgacagccg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
36457646 |
atgctgcagcagatgaaccacaggatctacatgagttacaattgacactccaatccactgataaaactccaaccaaaccacaaaacttcactgacagccg |
36457547 |
T |
|
| Q |
101 |
aagaatagatgttcctcgctctaattattgtcagaacagaacacaaaggatgaattatgatccgcaggcataatgtttcttgtgattaaattcaacattg |
200 |
Q |
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| T |
36457546 |
aagaatagatgttcctcgctctaattattgtcagaacagaacacaaaggatgaattatgatccgcaggcataatgtttcttgtgattaaattcaacattg |
36457447 |
T |
|
| Q |
201 |
actgcagcctcttctgcaggagcttccacccgaaaacctggactttcgacacatcgccaaattaggtgatatgctgctctaaactcgtcgcctgcatata |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
36457446 |
actgcagcctcttctgcaggagcttccacacgaaaacctggactttcgacacatcgccaaattaggtgatatgctactttaaactcgtcgcctgcatata |
36457347 |
T |
|
| Q |
301 |
aatctgacagcattctacatcagcttttgcagctgaatctctgcgtagattctagtttccagacccagtatcaggctggtcctgccttggagacgctgac |
400 |
Q |
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| T |
36457346 |
aatctgacagcattctacatcagcttttgcagctgaatctctgtgtagactctagtttccagacccagtatcaggctggtcctgccttggagacgctgac |
36457247 |
T |
|
| Q |
401 |
agcagcagcgtattcaaattctgcaccagttaggcctcccaatcaatagcattacgcttccaagatagcctctatgaccacccattattaatccactccc |
500 |
Q |
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| T |
36457246 |
agcagcagcgtattcaaattctgcaccagttaggcctcccaatcaatagcattacgcttccaagatagcctctatgaccacccattattaatccactccc |
36457147 |
T |
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| Q |
501 |
ctatg |
505 |
Q |
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||||| |
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| T |
36457146 |
ctatg |
36457142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 11629499 - 11629672
Alignment:
| Q |
5 |
tgcagcagatgaaccacaggatctacatgagttacaattgatactccaatccactgataaaactccaaacaaaccactaaacttcactgacagccgaaga |
104 |
Q |
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||||||| ||| |||| | ||||||||| ||||||||| || ||||||||||||||||||| || || |||||||| | |||||| ||| ||||||||| |
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| T |
11629499 |
tgcagcaaatgtaccataagatctacataagttacaatagacactccaatccactgataaacctttaaccaaaccacaacacttcattgatagccgaaga |
11629598 |
T |
|
| Q |
105 |
atagatgttcctcgctctaattattgtcagaacagaacacaaaggatgaattatgatccgcaggcataatgttt |
178 |
Q |
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| T |
11629599 |
atagatgtttctcgctctaattattgtcggaacagaacacaaaggatgaattatgatctgcaggcctaatgttt |
11629672 |
T |
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