View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12876_low_2 (Length: 452)
Name: NF12876_low_2
Description: NF12876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12876_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 28402145 - 28402426
Alignment:
| Q |
11 |
agcacagatcatttaacttgtgatcgagaactttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtag |
110 |
Q |
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| T |
28402145 |
agcacagatcatttaacttgtgatcgagaactttttacacaactcgacaaatcttattcttatgtgatcagagttgcgaatggagcaaaaattacagtag |
28402244 |
T |
|
| Q |
111 |
aaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgtt |
210 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
28402245 |
aaggcattggaacagttgtatttaagaatcactcaggttcgaaactagttttgaatgttt--tatatgttcctcaaatttctgaaaatctcttaagtgtt |
28402342 |
T |
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| Q |
211 |
catgaattgttgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaacaacaaagaggtgttc |
294 |
Q |
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| T |
28402343 |
cctgaattgttgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaacaacaaagaggtgttc |
28402426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 19931104 - 19931379
Alignment:
| Q |
14 |
acagatcatttaacttgtgatcgagaactttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtagaag |
113 |
Q |
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| T |
19931104 |
acagatcatttaacttgtgatcgagatttttttacagaactcgacaaatcttattcttctgtgatgacagttgcgaatggagcaaatattacagcagaag |
19931203 |
T |
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| Q |
114 |
gcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgttcat |
213 |
Q |
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| T |
19931204 |
gcattggaacagttgtatttaagaatcactcaggttcgaaactagttttgaatgttt--tatatgttcctcaaatttctgaaaatcttttaagtgttcct |
19931301 |
T |
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| Q |
214 |
gaattgttgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaacaacaaagaggtg |
291 |
Q |
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| T |
19931302 |
gaattgttgaataatggctacaaagtgttatttgaacatgaaaattgtgtgattaatgaccaaaacaacaaagaggtg |
19931379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 19134189 - 19133918
Alignment:
| Q |
21 |
atttaacttgtgatcgagaactttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtagaaggcattgg |
120 |
Q |
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| T |
19134189 |
atttaacttgtgatcgagaagtttttaccgaactcgacaaatcttattcttctgtgattagagttgcgaatggagcagaaattacatcagaaggcattgg |
19134090 |
T |
|
| Q |
121 |
aacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgttcatgaattgt |
220 |
Q |
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|||| | |||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |||||| |
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| T |
19134089 |
aacaatagtatttaagaatcattcaggttccaaactagttttgaatgtttt--atatgttcctcaaatttccgaaaatcttttaagtgttcctcaattgt |
19133992 |
T |
|
| Q |
221 |
tgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaacaacaaagaggtgttc |
294 |
Q |
| |
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| T |
19133991 |
tgaagaatggttacaaagtgttatttgaacatgaaagttgtatgattaatgaccaaaacaacgaagaggtgttc |
19133918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 322 - 436
Target Start/End: Original strand, 28402780 - 28402894
Alignment:
| Q |
322 |
tcctacgaggattataccataaacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacatacatcaaccatgaaattaaa |
421 |
Q |
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| T |
28402780 |
tcctacgaggattataccataaacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacatacatcaaccatgaaattaaa |
28402879 |
T |
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| Q |
422 |
tgcaatttcttctgt |
436 |
Q |
| |
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|||||| |||||||| |
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| T |
28402880 |
tgcaatatcttctgt |
28402894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 430
Target Start/End: Complemental strand, 32842220 - 32842095
Alignment:
| Q |
310 |
atagtgatcatgtcctacgaggattataccata-----aacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacataca |
404 |
Q |
| |
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|||||||||||||||||||| |||||||||| | |||||||||||| || | | ||||||||||||||| ||||||||| |||| ||||| ||||| |
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| T |
32842220 |
atagtgatcatgtcctacgacgattataccaaacctgaaacaacaatcagcacacataattaataatgttgcacagaaacatacaaatcagggatataca |
32842121 |
T |
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| Q |
405 |
tcaaccatgaaattaaatgcaatttc |
430 |
Q |
| |
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||||| ||||||| |||||||||||| |
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| T |
32842120 |
tcaacaatgaaatcaaatgcaatttc |
32842095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 310 - 430
Target Start/End: Complemental strand, 32836094 - 32835969
Alignment:
| Q |
310 |
atagtgatcatgtcctacgaggattataccata-----aacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacataca |
404 |
Q |
| |
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|||||||||||||||||||| |||||||||| | |||||||||||| || | ||||||||||||||| ||||||||| |||| ||||| ||||| |
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| T |
32836094 |
atagtgatcatgtcctacgacgattataccaaacctgaaacaacaatcagcacacaaaattaataatgttgcacagaaacatacaaatcagggatataca |
32835995 |
T |
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| Q |
405 |
tcaaccatgaaattaaatgcaatttc |
430 |
Q |
| |
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||||| ||||||| |||||||||||| |
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| T |
32835994 |
tcaacaatgaaatcaaatgcaatttc |
32835969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 106 - 287
Target Start/End: Original strand, 32531514 - 32531693
Alignment:
| Q |
106 |
agtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaa |
205 |
Q |
| |
|
||||||||||||||| |||||| || |||| | | ||||||||| |||| | ||| ||||||||||||| | |||| || || | ||| |||||||| |
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| T |
32531514 |
agtagaaggcattgggacagttttagttaaaagtcactcaggttataaacaaatttcgaatgttttatat--gctcctaaacttaatcaaagtcttttaa |
32531611 |
T |
|
| Q |
206 |
gtgttcatgaattgttgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaacaacaaaga |
287 |
Q |
| |
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|||||| | | ||||||| ||| |||||||||||||| ||||||||||| || ||||||||| | || |||||||| ||||| |
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| T |
32531612 |
gtgttcctcagttgttgacgaaaggctacaaagtgttgtttgaacatgagaagtgtgtgattaaagatcaaaacaataaaga |
32531693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 30759738 - 30759645
Alignment:
| Q |
82 |
agttgcgaatggagcaaaaattacagtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatat |
175 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| || | ||| ||| ||||||||| ||||||| ||||||||||||||||| |
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| T |
30759738 |
agttgcgaatggagcacctattgaggtagaaggcattggaacaattacaattagaaatcactcaggtttgaaactaattttgaatgttttatat |
30759645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 30749458 - 30749394
Alignment:
| Q |
107 |
gtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgtttt |
171 |
Q |
| |
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||||||||| ||||||||||| | |||| || ||||||||| ||||||| ||||||||||||| |
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| T |
30749458 |
gtagaaggctttggaacagttacaattaaacatcactcaggtttgaaactaattttgaatgtttt |
30749394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 5291822 - 5291891
Alignment:
| Q |
195 |
aaatcttttaagtgttcatgaattgttgaagaatggctacaaagtgttatttg-aacatgaaaattgtgt |
263 |
Q |
| |
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|||||||||||||||| | || ||||| | ||||||||||||||| |||||| ||||| |||||||||| |
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| T |
5291822 |
aaatcttttaagtgttgttcaaatgttgcaaaatggctacaaagtgctatttgaaacataaaaattgtgt |
5291891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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