View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12876_low_3 (Length: 344)
Name: NF12876_low_3
Description: NF12876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12876_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 6057403 - 6057709
Alignment:
| Q |
1 |
agatggataaggcccttacaagccaacatctccaaactagaaaatgtaagtagtgttagtaacttaagggaagcatgtaacaaaccttcctttgggaaag |
100 |
Q |
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| T |
6057403 |
agatggataaggcccttacaatccaacatttccaaactagaaaatgtaagtagtgttagagacttaagggaagcatgtaacaaaccttcctttgggaaag |
6057502 |
T |
|
| Q |
101 |
atttgatcccatcacatggaccttgaattgttacatcagtaagcatgttcatggaaggccaggacaggccagtaagtagtttctcgcaattcatgatgcg |
200 |
Q |
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| T |
6057503 |
atttgatcccatcacatggaccttgaattgttacatcagtaagcatgtccatggaaggccaggacagaccagtaagtagtttctcgcaattcatgatgcg |
6057602 |
T |
|
| Q |
201 |
aatcgatctcaacttaggtggcataccactttcgggaaatgattcaatttctgggcagttttctagtcgaaaatattctaactttggaagaagaatgttc |
300 |
Q |
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| T |
6057603 |
aatcgatctcaacttaggtggcataccactttcggggaatgattcaatttctggacagttttctagtcggaaatattctaactttggaagaagaatgttc |
6057702 |
T |
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| Q |
301 |
atctcat |
307 |
Q |
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||||||| |
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| T |
6057703 |
atctcat |
6057709 |
T |
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