View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_1 (Length: 945)
Name: NF12877_high_1
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 701; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 13 - 926
Target Start/End: Complemental strand, 13494257 - 13493335
Alignment:
| Q |
13 |
agcagagactcgagtaatatcaatttgtaatttgttttcatataaaacaaaacaaataatatccatattagatctaaagctttgcaaacttcagtttgga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13494257 |
agcagagactcgagtaatatcaatttgtaatttgttttcatataaaacaaaacaaataatatccatattagatctaaagctttgcaaacttcagtttgga |
13494158 |
T |
|
| Q |
113 |
acttatgactccagcagtcttaacattgaaaggtaatttaaagttttgtgctctttatgcaacataagacacacaagacgcacgaacaactaaaagagcg |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13494157 |
acttatgactccagcagtcttaacattgaaaggtaatttaaagttt-gtgctctttatgcaacataagacacacaagacgcacgaacaactaaaagagcg |
13494059 |
T |
|
| Q |
213 |
aaaaataatcaatgaacaagcaccgcagaaatcaagggagaaaacaaaaagtagaatgccaatcatcatttcacctgcccgcataccttccctacacaat |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13494058 |
aaaaataatcaatgaacaagcaccgcagaaatcaagggagaaaacaaaaagtagaatgccaatcatcatttcacctgcccgcataccttccctacacaag |
13493959 |
T |
|
| Q |
313 |
tcaacgtgtaatattaattagaaaaatgtaatcacatacgatttattttgtgcacaaatctcttatcatgtgattcagagtgcacgtgtgttaaatgagc |
412 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13493958 |
tcaacgtgtaatattaattagaaacatgtaatcacatacgatttattttgtgcacaaatctcttatcatgtgattcagaatgcacgtgtgttaaatgagc |
13493859 |
T |
|
| Q |
413 |
tagaagatttttcatatgttaagatttaac-----------------gaagcatttatgagctataagtttcttcaaactagtgtgcacacacactttca |
495 |
Q |
| |
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||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13493858 |
tagaagatttttcatatgttaagatctaacgtttatctcaaagctatgaagcatttacgagctataagtttcttcaaactagtgtgcacacacactttca |
13493759 |
T |
|
| Q |
496 |
tg-----------ccaaacatattagctattattcctctctttttggatatctaagaacaatttctatgttcctttcctctcatcaacctcagaaatatg |
584 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13493758 |
tgccaaaccaattccaaacatattagctattattcctctctttttggatatctaagaacaatttctatgttcctttcctctcatcaacctcagaaatatg |
13493659 |
T |
|
| Q |
585 |
gtcaagtggttgaccatgtgtgacagtatgaaccatgctaagaacctcctatctgacaaagtacaaatctagctcaatctgcttgcatgacagaattgta |
684 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | | |
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| T |
13493658 |
gtcaagtggttgaccatgtgtgacagtatgaaccatgctaagaacctcctatctgagaaagtacaaatctagctc----------cataa---------a |
13493578 |
T |
|
| Q |
685 |
actaagtgctaccgcactttgattctcacaataaacggaatatgtaaaaacacatt-nnnnnnngtgtaaagaatggaatatgtaactgagttagcagag |
783 |
Q |
| |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13493577 |
atttagtgctaccgcactttgattctcacaataaacggaatatgtaaaaacacattaaaaaaaagtgtaaagaatggaatatgtaactgagttagcagag |
13493478 |
T |
|
| Q |
784 |
actgcaccaaaccagtgtaacagcgatgaatgggtttgaaaacagaaaagtgtacatgtacaggagtgtttctctaatcaaaggacttgaattaattcat |
883 |
Q |
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| T |
13493477 |
actgcaccaaaccagtgtaacagcgatgaatgggtttgaaaacagaaaagtgtacatgtacaggagtgtttctctaatcaaaggacttgaattaattcat |
13493378 |
T |
|
| Q |
884 |
gataatatgttatagcagtagatcaatgaaaacagaaacaagg |
926 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
13493377 |
gataatatgttatagcagtagatcaatgataacagaaaaaagg |
13493335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 504 - 719
Target Start/End: Original strand, 6559961 - 6560197
Alignment:
| Q |
504 |
atattagctattattcctctctttttggatatctaagaacaatttctatgttcctttcctctcatcaacct----------cagaaatatggtcaagtgg |
593 |
Q |
| |
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||||||| ||||| || |||||| || ||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||| ||| |||| |
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| T |
6559961 |
atattagttattagtcttctcttcttcgatatctaagaacaatttctaagttactttcctctcatcaaccttcattgacctcagcaatatgatcatgtgg |
6560060 |
T |
|
| Q |
594 |
ttgaccatgtgtgacagtatgaaccatgctaagaacctcctatctgacaaagtacaaatctagctcaatctgc-----------ttgcatgacagaattg |
682 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||| | | || ||||||||||||||||||| || ||| |||||||||||| || |
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| T |
6560061 |
ttgaccatgtgtgagagtatgagtcatgctaagaaccttttctttgccaaagtacaaatctagctccatgtgctttttccgaagttgcatgacagagttt |
6560160 |
T |
|
| Q |
683 |
taactaagtgctaccgcactttgattctcacaataaa |
719 |
Q |
| |
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||||||||||| || |||||||||||||||||||||| |
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| T |
6560161 |
taactaagtgcaactgcactttgattctcacaataaa |
6560197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 6559535 - 6559630
Alignment:
| Q |
212 |
gaaaaataatcaatgaacaagcaccgcagaaatcaagggagaaaacaaaaagtagaatgccaatcatcatttcacctgcccgcataccttccctaca |
308 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||| |||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||||||| |
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| T |
6559535 |
gaaaaaaaatcgatgaacaagcaccgttgaaatccagggagaaaacaaaaagtagaatgtc-atcatcatttcaccagcctgcataccttccctaca |
6559630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 357 - 436
Target Start/End: Original strand, 6559723 - 6559802
Alignment:
| Q |
357 |
attttgtgcacaaatctcttatcatgtgattcagagtgcacgtgtgttaaatgagctagaagatttttcatatgttaaga |
436 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||| |||| |
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| T |
6559723 |
attttgtgcagaaatctcttatcatgtgattcaagatgcacgtgtgttcaatgagctataagctttttcatatgtcaaga |
6559802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 748 - 821
Target Start/End: Original strand, 6560204 - 6560277
Alignment:
| Q |
748 |
gtgtaaagaatggaatatgtaactgagttagcagagactgcaccaaaccagtgtaacagcgatgaatgggtttg |
821 |
Q |
| |
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|||||||||| ||||| ||||||| ||| || ||||||||||||||||||||||||||| || ||||||||||| |
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| T |
6560204 |
gtgtaaagaaaggaatttgtaactaagtgagtagagactgcaccaaaccagtgtaacagtgacgaatgggtttg |
6560277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 513 - 628
Target Start/End: Complemental strand, 13486777 - 13486652
Alignment:
| Q |
513 |
attattcctctctttttggatatctaagaacaatttctatgttcctttcctctcatcaacct----------cagaaatatggtcaagtggttgaccatg |
602 |
Q |
| |
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||||||| ||| || || ||||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||||| |
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| T |
13486777 |
attattcttcttttctttgatatctaatagcaatttctatgttcctttcctgtcatcaaccttaattgagctcagcaatatggtcaagttgttgaccatg |
13486678 |
T |
|
| Q |
603 |
tgtgacagtatgaaccatgctaagaa |
628 |
Q |
| |
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|||||||||| || ||||||||||| |
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| T |
13486677 |
tgtgacagtacgagtcatgctaagaa |
13486652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 319 - 426
Target Start/End: Complemental strand, 13483349 - 13483242
Alignment:
| Q |
319 |
tgtaatattaattagaaaaatgtaatcacatacgatttattttgtgcacaaatctcttatcatgtgattcagagtgcacgtgtgttaaatgagctagaag |
418 |
Q |
| |
|
|||||||| ||| |||| || |||||| ||| |||| | ||||||||||||||||||||||||||||||| ||||| |||||| || ||| |||||| |
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| T |
13483349 |
tgtaatatatattggaaatatttaatcagataagattcactttgtgcacaaatctcttatcatgtgattcaagatgcacatgtgttcaacgagatagaag |
13483250 |
T |
|
| Q |
419 |
atttttca |
426 |
Q |
| |
|
||||||| |
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|
| T |
13483249 |
ctttttca |
13483242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 13487087 - 13487029
Alignment:
| Q |
250 |
gagaaaacaaaaagtagaatgccaatcatcatttcacctgcccgcataccttccctaca |
308 |
Q |
| |
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||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||| |
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| T |
13487087 |
gagaaaacaaaaagtagaacaccaatcatcattccaccagcccacataccttccctaca |
13487029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 13487289 - 13487253
Alignment:
| Q |
84 |
atctaaagctttgcaaacttcagtttggaacttatga |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
13487289 |
atctaaagctttgcaaacttcagtttggaacttatga |
13487253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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