View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_10 (Length: 529)
Name: NF12877_high_10
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 9 - 510
Target Start/End: Original strand, 44461116 - 44461616
Alignment:
| Q |
9 |
gagtgagatgaagggttcattttttggtaaagatcttcctccaaattaagtgtattgaataacaaacaaattcctattatagcaaaaaacaaatcactgg |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461116 |
gagtgcgatgaagggttcattttttggtaaagatcttcctccaaattaagtgtattgaataacaaacaaattcctattatagcaaaaaacaaatcactgg |
44461215 |
T |
|
| Q |
109 |
acaccaaatgtacctctctccccccattataaaaccatgaaaccttcctctaccatatcctcgtggttgcacacaacaatcaataaaaacccaactccga |
208 |
Q |
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| T |
44461216 |
acaccaaatgtacctctctccccccattataaaaccatgaaaccttcctctaccatatcctcgtggttgcacacaacaatcaataaaaacccaactccga |
44461315 |
T |
|
| Q |
209 |
gaagaacaagaaaaataagtgacaacnnnnnnnnnnntacatcatgacaaaactcttctcggttttggttatctgtgtgattgtattggcacaccaaaca |
308 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461316 |
gaagaacaagaaaaataagtgacaacaaaaaaaaaac-acatcatgacaaaactcttctcggttttggttatctgtgtgattgtattggcacaccaaaca |
44461414 |
T |
|
| Q |
309 |
gtcgcacaagaaaccaaaggtaaagatttaatcacaagggtatgccagctagcacagaaaaacagtgacctctgtgttgaagttctgtcatccgacccaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461415 |
gtcgcacaagaaaccaaaggtaaagatttaatcacaagggtatgccagctagcacagaaaaacagtgacctctgtgttgaagttctgtcatccgacccaa |
44461514 |
T |
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| Q |
409 |
aatccgcaaacgcagacgacattaatgatttggcaattatagcactaagagttgctgctagaaatgcttctgcaatgttaaacgacgtgaaatcaatgat |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461515 |
aatccgcaaacgcagacgacattaatgatttggcaattatagcactaagagttgctgctagaaatgcttctgcaatgttaaacgacgtgaaatcaatgat |
44461614 |
T |
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| Q |
509 |
tg |
510 |
Q |
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|| |
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| T |
44461615 |
tg |
44461616 |
T |
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