View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_11 (Length: 510)
Name: NF12877_high_11
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 492
Target Start/End: Complemental strand, 43695672 - 43695188
Alignment:
| Q |
8 |
gagagagatgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaa |
107 |
Q |
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| T |
43695672 |
gagagacatgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaa |
43695573 |
T |
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| Q |
108 |
tctgctttaggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaagg |
207 |
Q |
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| T |
43695572 |
tctgctttaggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaagg |
43695473 |
T |
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| Q |
208 |
caaagctgattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttggattctgaattgggatgtgg |
307 |
Q |
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| T |
43695472 |
caaagctgattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaacgaaaggattcgaagaaagagatttggattctgaattgggatgtgg |
43695373 |
T |
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| Q |
308 |
gagttggagaccatagacttatagctatgtatggattcatttcaatgtcgttcatagtattatattttgaatcattatatgaaatgtgnnnnnnnatctg |
407 |
Q |
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| T |
43695372 |
gagttggagaccatagacttatagctatgtatggattcatttcaatgtcgttcatagtattatattttgaatcattatatgaaatgtgtttttttatctg |
43695273 |
T |
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| Q |
408 |
gttaacatactataccttgtttaccatggttgttttttggtttagaagttataaagtggtaggtattcacgacgactattctttc |
492 |
Q |
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| T |
43695272 |
gttaacatactataccttgtttaccatggttgttttttggtttagaagttataaagtgttaggtattcacgacgactattctttc |
43695188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 43709558 - 43709432
Alignment:
| Q |
15 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
114 |
Q |
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| T |
43709558 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
43709459 |
T |
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| Q |
115 |
taggaattaaaagctatgtggagaaag |
141 |
Q |
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| T |
43709458 |
taagaatgaaaagttacgtggagaaag |
43709432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 43707834 - 43707708
Alignment:
| Q |
15 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
114 |
Q |
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| T |
43707834 |
atgaatgaccaaccttgtaaggatactaaagttttatacgaggaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctt |
43707735 |
T |
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| Q |
115 |
taggaattaaaagctatgtggagaaag |
141 |
Q |
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| T |
43707734 |
taggaatgaaaagttttgtggagaaag |
43707708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 43696443 - 43696407
Alignment:
| Q |
27 |
gcttgtaaggatcttcaagttttatgggaggaacttg |
63 |
Q |
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| T |
43696443 |
gcttgtaaggatcttcaaattttctgggaggaacttg |
43696407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 15827235 - 15827530
Alignment:
| Q |
7 |
cgagagagatgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttca |
106 |
Q |
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||||||| |||||||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||| || | |||||||| |
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| T |
15827235 |
cgagagacatgaatgaacaagcttgtaaggatcttcaagttttatgggaggaactagcgaaatttaaatttgatattacttggctagaatcgcatgttca |
15827334 |
T |
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| Q |
107 |
atctgctttaggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaag |
206 |
Q |
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| T |
15827335 |
ctatgctttaggaataaaaagatacatggagaaagctctggaggctgaaaagatgaaggagaacatggtagttttagagcttgaaatggaaaggctaaag |
15827434 |
T |
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| Q |
207 |
gcaaagctgattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttggattctgaattggga |
302 |
Q |
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| T |
15827435 |
gttaagtcgcttgcagctgagatgaatcttgacatggaaagagacttgttgaaatccaaaggtttcaaagaattagatttagattctgaattggga |
15827530 |
T |
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