View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_15 (Length: 454)
Name: NF12877_high_15
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 15 - 436
Target Start/End: Complemental strand, 18486974 - 18486573
Alignment:
| Q |
15 |
cacagacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattct |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18486974 |
cacaaacaatgagaccaccatctttagatgttgtgattccaagcaaagaagagctatctatatgcttccaattctcccaatttccattcctaaccattct |
18486875 |
T |
|
| Q |
115 |
tttaatccaaccatctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcaca |
214 |
Q |
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|||||||||||||||||| || |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18486874 |
tttaatccaaccatctcttgttgctgtatataaaataccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcaca |
18486775 |
T |
|
| Q |
215 |
ttctatcatgttatggaaacattaatagacaattaaatacatatgatattgaacaatatagctatagttaaattatgtaacaaatgttgataaaattttc |
314 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||| |||||||||| ||| |
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| T |
18486774 |
ttctgttatgttatggaaacattaatagacaattaaatacatattattttgaa--------------------aatgtgacaaatattgataaaatattc |
18486695 |
T |
|
| Q |
315 |
acctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttgaactg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18486694 |
acctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttgaactg |
18486595 |
T |
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| Q |
415 |
tgagagcaactaaagctgctag |
436 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
18486594 |
tgagagcaactaaagctgctag |
18486573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 436
Target Start/End: Complemental strand, 18513323 - 18512922
Alignment:
| Q |
15 |
cacagacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattct |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18513323 |
cacacacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattct |
18513224 |
T |
|
| Q |
115 |
tttaatccaaccatctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcaca |
214 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18513223 |
tttaatccaaccatctcttgtagctgtatatagaacaccatttttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcaca |
18513124 |
T |
|
| Q |
215 |
ttctatcatgttatggaaacattaatagacaattaaatacatatgatattgaacaatatagctatagttaaattatgtaacaaatgttgataaaattttc |
314 |
Q |
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|||| | |||||||||||||||||||||| |||||||||||||| || ||||| |||| ||||| |||||||||| ||| |
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| T |
18513123 |
ttctgttatgttatggaaacattaatagataattaaatacatattattttgaa--------------------aatgtggcaaatattgataaaatattc |
18513044 |
T |
|
| Q |
315 |
acctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttgaactg |
414 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18513043 |
acctgtaattggttgtttttggttgaagaaggtgaagatgcagaagaaggaatttctagtataactggatctatcggtgagaagtagaagacttgaactg |
18512944 |
T |
|
| Q |
415 |
tgagagcaactaaagctgctag |
436 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
18512943 |
tgagagcaactaaagatgctag |
18512922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 18506825 - 18506620
Alignment:
| Q |
15 |
cacagacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattct |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18506825 |
cacaaacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattct |
18506726 |
T |
|
| Q |
115 |
tttaatccaaccatctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcaca |
214 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18506725 |
tttaatccaaccatctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
18506626 |
T |
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| Q |
215 |
ttctat |
220 |
Q |
| |
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||||| |
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| T |
18506625 |
ctctat |
18506620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 18506457 - 18506397
Alignment:
| Q |
377 |
aactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagt |
437 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18506457 |
aactggatctatgggtgaaaagtagaagacttgaactgtgagagcaactaaagctgctagt |
18506397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 18506515 - 18506482
Alignment:
| Q |
310 |
ttttcacctgtaattggttgtttttggttgaaga |
343 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
18506515 |
ttttcacctgtaattggttgtttttggttgaaga |
18506482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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