View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_17 (Length: 435)
Name: NF12877_high_17
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 417
Target Start/End: Complemental strand, 39365584 - 39365170
Alignment:
| Q |
12 |
acagagatgagggtgcacatggattgccctggatgtgaaaacaaagtgaaaactgcacttcagaaaatgaaaggtacctt---------attttgtacat |
102 |
Q |
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| T |
39365584 |
acagagatgagggtgcacatggattgccctggatgtgaaaacaaagtgaaaactgcacttcagaaaatgaaaggtaccttcgtttgcttattttgtacat |
39365485 |
T |
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| Q |
103 |
tttcatcttccttccaagcataaggtaatagtgatcatatgattttttgtatgtatttaaaggtgtggatgacattgaaatagacatgaagttgcaaaag |
202 |
Q |
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| T |
39365484 |
tttcatcttccttccaagcataaggtaatagtgatcatatgattttttgtatttatttaaaggtgtggatgacattgaaatagacatgaagttgcaaaag |
39365385 |
T |
|
| Q |
203 |
gtgacggtgaatggttttgctgatcagaagaaggttctaaaaagggttcgaaaaactggacttagggctgagttatggcagcttcctcacacaacagaat |
302 |
Q |
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| T |
39365384 |
gtgacggtgaatggttttgctgatcagaagaaggttctaaaaagggttcgaaaaactggacttagggctgagttatggcagcttcctcacacaacagaat |
39365285 |
T |
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| Q |
303 |
ctcaaagtcaatattatcaacaacacctttgcaatggccctatccctcattatgcttcacaaccttcctcatcttataactaccacaagcatggttatga |
402 |
Q |
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| T |
39365284 |
ctcaaagtcaatattatcaacaacacctttgcaatggccctatccctcattatgcttcacaaccttcctcatcttataactaccacaagcatggttatga |
39365185 |
T |
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| Q |
403 |
tagtagtgatcctag |
417 |
Q |
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| T |
39365184 |
tagtagtgatcctag |
39365170 |
T |
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