View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_19 (Length: 430)
Name: NF12877_high_19
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 23 - 420
Target Start/End: Complemental strand, 17779933 - 17779536
Alignment:
| Q |
23 |
caatggtgctattttgaaaatctcccattgcagtcaaatttctattccataacatttgagttcacatatttcctcaagttacaacnnnnnnnnnncaaag |
122 |
Q |
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| T |
17779933 |
caatggtaccattttgaaaatctcccattgcagtcaaatttctattccataacatttgagttcacatatttgctcaagttacaacttttttttttcaaag |
17779834 |
T |
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| Q |
123 |
tacattaaaatcaactnnnnnnnnnnnntagaagttcaacatgctaatgtaaaattgaacacaaatcaaagttnnnnnnnggtcagaatcactagtactc |
222 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
17779833 |
tacattaaaatcaactaaaaaataaaaatagaagttctacatgctaatgtaaaattgaacacaaatcaaagttaaaaaaaggtcagaatcaccagtactc |
17779734 |
T |
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| Q |
223 |
acttcctactatagaagctagctagaaaaaataagtgcttctagattctacttatgtaaaaataaaaggtacaaattaagtgtaacacttggttattgaa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17779733 |
acttcctactatagaagctagctagaaaaaataagtgcttctagattctacttatgtaaaaataaaaggtacaaattaagtgtaacacttggttgttgaa |
17779634 |
T |
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| Q |
323 |
taactagagggaacatcaataggacaaaatgaagtatcccaaagcaaatttgacttccatgcatcaccaatattgaaattcatcaattcttgttcatc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17779633 |
taactagagggaacatcaataggacaaaatgaagtatcccaaagcaaatttgacttccatgcatcaccaatattgaaattcatcaattcttgttcatc |
17779536 |
T |
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