View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_20 (Length: 405)
Name: NF12877_high_20
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 48385635 - 48385258
Alignment:
| Q |
20 |
ccatcttaatattatttacattttcaatctccttcactaccaatccgaaattaggatgccagtattgtggattcttctccaaatacctagttttgaaaaa |
119 |
Q |
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| T |
48385635 |
ccatcttaatattatttacattttcaatctccttcactaccaatccaaaattaggatgccagtattgtggattcttctccaaatacctagttttgaaaaa |
48385536 |
T |
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| Q |
120 |
gacattagaacaaagaaatgcattgaaatactaagattacggcaataagacttgttccaaattgaggataaaactccactagcttacctcttcacttttt |
219 |
Q |
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| T |
48385535 |
gacattagaacaaagaaattcattgaaatactaagattacggcaataagacttgttccaaattgaggataaaactccactagcttacctcttcacttttt |
48385436 |
T |
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| Q |
220 |
ctttcagtgccccaattttctctgctggtgtcgtaaaatcaaccgagaactctaccttgtcaaccatatttgggcttctgtaataattgctaatcggttt |
319 |
Q |
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| T |
48385435 |
ctttcagtgccccaattttctctgctggtgtcgtaaaatcaaccgagaactctaccttttcaaccatatttgggcttctgtaataattgctaatcggttt |
48385336 |
T |
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| Q |
320 |
agaggcgaggacagagtttggataatacaacttttcattattaagcttcaagaatactgttgtcaatatattcatctc |
397 |
Q |
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| T |
48385335 |
agaggcgaggacagagtttggataatacaacttttcattattaagcttcaagaatactgttgtcaatatattcatctc |
48385258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 48366105 - 48365718
Alignment:
| Q |
20 |
ccatcttaatattatttacattttcaatctccttcactaccaatccgaaattaggatgccagtattgtggattcttctccaaatacctagttttga---- |
115 |
Q |
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| T |
48366105 |
ccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatgccagtattgtggattcctctccgcgtacctattttttattta |
48366006 |
T |
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| Q |
116 |
-------aaaagacattagaacaaagaaatgcattgaaatactaagattacggcaataagacttgttccaaattgaggataaaactc--cactagcttac |
206 |
Q |
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| || |||||| ||||||||||| ||| ||||| |||||||| |||| |||| |||||||||||| ||||||||| || |||||||| |
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| T |
48366005 |
tttttaaacaaaacattacaacaaagaaatacatagaaatcttaagattaaagcaacaagagttgttccaaatttgtgataaaacttttcagtagcttac |
48365906 |
T |
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| Q |
207 |
ctcttcactttttctttcagtgccccaattttctctgctggtgtcgtaaaatcaaccgagaactctaccttgtcaaccatatttgggcttctgtaataat |
306 |
Q |
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| T |
48365905 |
ctcgttattttttctttcaatgctccaattttctctgctggtgtcgtaaaatcaaccgagaactctataccttcagccatatttgggcttctgtaataat |
48365806 |
T |
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| Q |
307 |
tgctaatcggtttagaggcgaggacagagtttggataatacaacttttcattattaagcttcaagaatactgttgtcaatatattcat |
394 |
Q |
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| T |
48365805 |
tgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagcttcaagaatactgttgtcaatatattcat |
48365718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 199 - 394
Target Start/End: Original strand, 48396656 - 48396851
Alignment:
| Q |
199 |
tagcttacctcttcactttttctttcagtgccccaattttctctgctggtgtcgtaaaatcaaccgagaactctaccttgtcaaccatatttgggcttct |
298 |
Q |
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||||||||||||| | |||||| ||||||| || ||||||||||||| || ||||||||||| ||||||||||| ||||| ||||||| |||||||| |
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| T |
48396656 |
tagcttacctctttattttttcattcagtgatccgattttctctgctgacgttgtaaaatcaactgagaactctacactgtcacccatattagggcttct |
48396755 |
T |
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| Q |
299 |
gtaataattgctaatcggtttagaggcgaggacagagtttggataatacaacttttcattattaagcttcaagaatactgttgtcaatatattcat |
394 |
Q |
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| T |
48396756 |
gtaataattgctgatcggttttatggctaggacagagtttggataatacaccttttcattattaagtttcaagaatactgttgtcagtatgttcat |
48396851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 48396446 - 48396534
Alignment:
| Q |
20 |
ccatcttaatattatttacattttcaatctccttcactaccaatccgaaattaggatgccagtattgtggattcttctccaaataccta |
108 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
48396446 |
ccatcttaatcttatttacattttcaatctccttcactgccaaactgaaactaggatgccagtattgtggattcctctccaaataccta |
48396534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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