View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_high_25 (Length: 384)

Name: NF12877_high_25
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_high_25
NF12877_high_25
[»] scaffold0103 (2 HSPs)
scaffold0103 (90-377)||(26661-26948)
scaffold0103 (18-83)||(26929-26994)
[»] chr2 (2 HSPs)
chr2 (123-312)||(22634350-22634538)
chr2 (123-312)||(41895752-41895940)
[»] chr3 (2 HSPs)
chr3 (123-312)||(12900033-12900221)
chr3 (123-312)||(30683761-30683949)
[»] chr8 (2 HSPs)
chr8 (123-312)||(45499055-45499244)
chr8 (123-312)||(45490097-45490286)
[»] chr4 (3 HSPs)
chr4 (123-312)||(14932022-14932211)
chr4 (123-312)||(14941227-14941416)
chr4 (157-205)||(30627309-30627357)
[»] chr5 (5 HSPs)
chr5 (123-312)||(29958126-29958314)
chr5 (123-312)||(15321661-15321849)
chr5 (123-312)||(15330664-15330852)
chr5 (123-312)||(18707905-18708093)
chr5 (123-312)||(18716919-18717107)
[»] scaffold0113 (2 HSPs)
scaffold0113 (123-249)||(4321-4446)
scaffold0113 (23-55)||(4249-4281)
[»] chr1 (1 HSPs)
chr1 (123-201)||(19419390-19419468)


Alignment Details
Target: scaffold0103 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 90 - 377
Target Start/End: Complemental strand, 26948 - 26661
Alignment:
Q  90 aaaggtttccaaaggaagggccattgatatcatgacaacacatcaaggtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcac 189  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  26948 aaaggtttacaaaggaagggccaatgatatcatgacaacacatcaaggtgaaagataaattgtaatactatgatcccttggatattcactttttggtcac 26849  T
Q  190 ctcacaacatgacaagaatagtaacatagtacaacaaaaggcttttctttgggctcaagacttatgctccagcaagaagtgataaagcaatgagctgcac 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||| ||    
T  26848 ctcacaacatgacaagaatagtaacatagtacaacaaaaggcttttctttgggcttaagacttatgctccagcaagaaatgataaaacaatgagctgtac 26749  T
Q  290 aaagctcagctctcacgaagcaaacaaagaaatgcttcagcagaatttgagatcgatctcaattcatcataagaacagtttcatctca 377  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  26748 aaagctcagctctcacgaagcaaacaaagaaatgcttcagcaggatttgagatcgatctcaattcatcttaagaacagtttcacctca 26661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 26994 - 26929
Alignment:
Q  18 tttgaacatatgaacaaaaagaacacatttaatatcatatggaacaaaaggtttacaaaggaaggg 83  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  26994 tttgaacatatgaacaaaaagaacacatttaatatcatatgcagcaaaaggtttacaaaggaaggg 26929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 22634350 - 22634538
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| ||| |||||||||  ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||  || ||||||    
T  22634350 gacaacacatcaagagtgtaagacaaata-caatactatgaacctttggatattcactttatggtcacctcacaacatgacaagaa-agctacctagtac 22634447  T
Q  222 aacaaaaggcttttctttgggctcaagacttatgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| ||||||||||||||||||||||||| | |||||| |||||| || | |||||| || ||||||||||  ||||||| |||||    
T  22634448 aagaaaagccttttctttgggctcaagacttatgttacagcaacaagtgaaaaggaaatgagttgtacaaagctcatgtctcacgtagcaa 22634538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 41895752 - 41895940
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| ||| |||||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||  || ||||||    
T  41895752 gacaacacatcaagagtgtaagacaaata-caaaactatgaacctttggatattcactttatggtcacctcacaacatgacaagaa-agctacctagtac 41895849  T
Q  222 aacaaaaggcttttctttgggctcaagacttatgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| ||||||||||||||||||||||||| | |||||| || ||| || | ||||||||| ||||||||||  ||||||| |||||    
T  41895850 aagaaaagccttttctttgggctcaagacttatgttacagcaacaaatgaaaaggaaatgagctgtacaaagctcatgtctcacgtagcaa 41895940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 12900221 - 12900033
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| ||| |||||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||  || ||||||    
T  12900221 gacaacacatcaagagtgtaagacaaata-caaaactatgaacctttggatattcactttatggtcacctcacaacatgacaagaa-agctacctagtac 12900124  T
Q  222 aacaaaaggcttttctttgggctcaagacttatgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| ||||||||||||||||||||||||| | |||||| |||||| || | |||||| || ||||||||||  ||||||| |||||    
T  12900123 aagaaaagccttttctttgggctcaagacttatgttacagcaacaagtgaaaaggaaatgagttgtacaaagctcatgtctcacgtagcaa 12900033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 30683761 - 30683949
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| ||| |||||||||  ||| ||||| | || ||||||||| ||||| ||||||| ||||||||||||||||| ||  || ||||||    
T  30683761 gacaacacatcaagagtgtaagacaaata-caaaactataaacctttggatatttactttatggtcacttcacaacatgacaagaa-agctacctagtac 30683858  T
Q  222 aacaaaaggcttttctttgggctcaagacttatgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| |||||||||||||||||| |||||| | |||||| |||||| || | ||||||||| ||||||||||  ||||||| |||||    
T  30683859 aagaaaagccttttctttgggctcaagtcttatggtacagcaacaagtgaaaaggaaatgagctgtacaaagctcatgtctcacgtagcaa 30683949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 45499244 - 45499055
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| |||||||||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||  || ||||||    
T  45499244 gacaacacatcaagagtgaaagacaaata-caaaactatgaacctttggatattcactttatggtcacctcacaacatgacaagaa-agctacctagtac 45499147  T
Q  222 aacaaaaggcttttctttgggctcaagactt-atgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| |||||||||||||||||||||| ||| | |||||| || ||| || | ||||||||| ||||||||||  ||||||| |||||    
T  45499146 aagaaaagccttttctttgggctcaagacttaatgttacagcaacaaatgaaaaggaaatgagctgtacaaagctcatgtctcacgtagcaa 45499055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 45490286 - 45490097
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| |||||||||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||  || ||||||    
T  45490286 gacaacacatcaagagtgaaagacaaata-caaaactatgaacctttggatattcactttatggtcacctcacaacatgacaagaa-agctacctagtac 45490189  T
Q  222 aacaaaaggcttttctttgggctcaagactt-atgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| |||||||||||||||||||||| ||| | |||||| || ||| || | |||||| || ||||||||||  ||||||| |||||    
T  45490188 aagaaaagccttttctttgggctcaagacttaatgttacagcaacaaatgaaaaggaaatgagttgtacaaagctcatgtctcacgtagcaa 45490097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 14932022 - 14932211
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| |||||||||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||  || ||||||    
T  14932022 gacaacacatcaagagtgaaagacaaata-caaaactatgaacctttggatattcactttatggtcacctcacaacatgacaagaa-agctacctagtac 14932119  T
Q  222 aacaaaaggcttttctttgggctcaagactt-atgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| |||||||||||||||||||||| ||| | |||||| || ||| || | ||||||||| ||||||||||  ||||||| |||||    
T  14932120 aagaaaagccttttctttgggctcaagacttaatgttacagcaacaaatgaaaaggaaatgagctgtacaaagctcatgtctcacgtagcaa 14932211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 14941227 - 14941416
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| |||||||||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||  || ||||||    
T  14941227 gacaacacatcaagagtgaaagacaaata-caaaactatgaacctttggatattcactttatggtcacctcacaacatgacaagaa-agctacctagtac 14941324  T
Q  222 aacaaaaggcttttctttgggctcaagactt-atgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| |||||||||||||||||||||| ||| | |||||| || ||| || | ||||||||| ||||||||||  ||||||| |||||    
T  14941325 aagaaaagccttttctttgggctcaagacttaatgttacagcaacaaatgaaaaggaaatgagctgtacaaagctcatgtctcacgtagcaa 14941416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 30627357 - 30627309
Alignment:
Q  157 ctatgatcccttggatattcactttttggtcacctcacaacatgacaag 205  Q
    ||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  30627357 ctatgatcctttggatattctctttatggtcacctcacaacatgacaag 30627309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 29958126 - 29958314
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| ||| |||||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||   | ||||||    
T  29958126 gacaacacatcaagagtgtaagacaaata-caaaactatgaacctttggatattcactttatggtcacctcacaacatgacaagaa-agctgcctagtac 29958223  T
Q  222 aacaaaaggcttttctttgggctcaagacttatgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| |||||||||||||||||| |||||| | |||||| |||||| || | ||||||||| ||||||||||  ||||||| |||||    
T  29958224 aagaaaagccttttctttgggctcaagtcttatggtacagcaacaagtgaaaaggaaatgagctgtacaaagctcatgtctcacgtagcaa 29958314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 15321849 - 15321661
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| ||| |||||||||  ||| ||||| | || ||||||||| ||||| ||||||||||||||||||||||||| ||  || ||||||    
T  15321849 gacaacacatcaagagtgtaagacaaata-caaaactataaacctttggatatttactttatggtcacctcacaacatgacaagaa-agctacctagtac 15321752  T
Q  222 aacaaaaggcttttctttgggctcaagacttatgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| |||||||||||||||||| |||||| | |||||| |||||| || | ||||||||| ||||||||||  ||||||| |||||    
T  15321751 aagaaaagccttttctttgggctcaagtcttatggtacagcaacaagtgaaaaggaaatgagctgtacaaagctcatgtctcacgtagcaa 15321661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 15330852 - 15330664
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| ||| |||||||||  ||| ||||| | || ||||||||| ||||| ||||||||||||||||||||||||| ||  || ||||||    
T  15330852 gacaacacatcaagagtgtaagacaaata-caaaactataaacctttggatatttactttatggtcacctcacaacatgacaagaa-agctacctagtac 15330755  T
Q  222 aacaaaaggcttttctttgggctcaagacttatgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| |||||||||||||||||| |||||| | |||||| |||||| || | ||||||||| ||||||||||  ||||||| |||||    
T  15330754 aagaaaagccttttctttgggctcaagtcttatggtacagcaacaagtgaaaaggaaatgagctgtacaaagctcatgtctcacgtagcaa 15330664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 18707905 - 18708093
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| ||| |||||||||  ||| ||||| | || ||||||||| ||||| ||||||| ||||||||||||||||| ||  || ||||||    
T  18707905 gacaacacatcaagagtgtaagacaaata-caaaactataaacctttggatatttactttatggtcacttcacaacatgacaagaa-agctacctagtac 18708002  T
Q  222 aacaaaaggcttttctttgggctcaagacttatgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| |||||||||||||||||| |||||| | |||||| |||||| || | ||||||||| ||||||||||  ||||||| |||||    
T  18708003 aagaaaagccttttctttgggctcaagtcttatggtacagcaacaagtgaaaaggaaatgagctgtacaaagctcatgtctcacgtagcaa 18708093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 18716919 - 18717107
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| ||| |||||||||  ||| ||||| | || ||||||||| ||||| ||||||| ||||||||||||||||| ||  || ||||||    
T  18716919 gacaacacatcaagagtgtaagacaaata-caaaactataaacctttggatatttactttatggtcacttcacaacatgacaagaa-agctacctagtac 18717016  T
Q  222 aacaaaaggcttttctttgggctcaagacttatgctccagcaagaagtgataaagcaatgagctgcacaaagctcagctctcacgaagcaa 312  Q
    || ||||| |||||||||||||||||| |||||| | |||||| |||||| || | ||||||||| ||||||||||  ||||||| |||||    
T  18717017 aagaaaagccttttctttgggctcaagtcttatggtacagcaacaagtgaaaaggaaatgagctgtacaaagctcatgtctcacgtagcaa 18717107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 123 - 249
Target Start/End: Original strand, 4321 - 4446
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatgacaagaatagtaacatagtac 221  Q
    |||||||||||||| ||| |||||||||  ||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||| || ||| ||||||    
T  4321 gacaacacatcaagagtgtaagacaaata-caaaactatgatcctttggatattcactttatggtcacctcacaacataacaagaa-agcaacctagtac 4418  T
Q  222 aacaaaaggcttttctttgggctcaaga 249  Q
    |||||||| |||||||||||||||||||    
T  4419 aacaaaagccttttctttgggctcaaga 4446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 4249 - 4281
Alignment:
Q  23 acatatgaacaaaaagaacacatttaatatcat 55  Q
    |||||||||||||||||||| ||||||||||||    
T  4249 acatatgaacaaaaagaacatatttaatatcat 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 19419390 - 19419468
Alignment:
Q  123 gacaacacatcaag-gtgaaagacaaattgcaatactatgatcccttggatattcactttttggtcacctcacaacatga 201  Q
    |||||||||||||| ||| ||||||||   ||| ||||||| || ||||||||||||||| |||||||||||||||||||    
T  19419390 gacaacacatcaagagtgtaagacaaaaa-caaaactatgaacctttggatattcactttatggtcacctcacaacatga 19419468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University