View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_26 (Length: 378)
Name: NF12877_high_26
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 305
Target Start/End: Original strand, 12312876 - 12313158
Alignment:
| Q |
23 |
cacaattgttctactgtatatgcttcatctgggtgtacaagaacatgttcgtttgtgtcgtgtggtcccattaaattgctttcttaacatagttttctca |
122 |
Q |
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| T |
12312876 |
cacaattgttctactatatatgcttcatctgggtgtacaagaacatgttcgtttgtgttgtgtggtcccatcatattgtcttcttaacatagatttctca |
12312975 |
T |
|
| Q |
123 |
tagggaattgttatatggaaaatgctagatattagttatagcgtgattctgtaatagattaggaccgttcagtttatatgaacggtctagatcatccaac |
222 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||| |||| |||||| ||||||||||||| |||||||||||||||| | ||||||| |||| |
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| T |
12312976 |
aagggaattgttatatggaaaatgctagatatcagttacagcatgatgctgtaacagattaggaccgtccagtttatatgaacggcccagatcattcaac |
12313075 |
T |
|
| Q |
223 |
tgtattaaattgatgtctaatcttaaccgtcgttctaatattaatggttgagatttattacagcatcaaactgtgtgcttttt |
305 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
12313076 |
tgtattaaattgatgtctaatcttaaccgttgttctaatattaatggctgagatttattacagcatcaaactgtgtgtttttt |
12313158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 5005389 - 5005506
Alignment:
| Q |
203 |
aacggtctagatcatccaactgtattaaattgatgtctaatcttaaccgtc-gttctaatattaatggttgagatttattacagcatcaaactgtgtgct |
301 |
Q |
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|||||| ||||| || ||||||| ||||| |||||| |||||| ||||||| || ||||||| ||||| || |||||||||||||| |||||||||| || |
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| T |
5005389 |
aacggtttagattattcaactgtgttaaactgatgtttaatctgaaccgtccgtactaatatcaatggctgggatttattacagcaccaaactgtgttct |
5005488 |
T |
|
| Q |
302 |
tttttactgctccaaatc |
319 |
Q |
| |
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| T |
5005489 |
tttttacagcaccaaatc |
5005506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 319
Target Start/End: Original strand, 17457977 - 17458078
Alignment:
| Q |
219 |
caactgtattaaattgatgtctaatcttaaccgtc-gttctaatattaatggttgagatttattacagcatcaaactgtgtgcttttttactgctccaaa |
317 |
Q |
| |
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||||||| ||||| |||||| |||||| ||||||| || ||||||| ||||||||||||||||||||||| |||||||| | ||||||||| || ||||| |
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| T |
17457977 |
caactgtgttaaactgatgtttaatctaaaccgtccgtcctaatatcaatggttgagatttattacagcaccaaactgtattcttttttacggcaccaaa |
17458076 |
T |
|
| Q |
318 |
tc |
319 |
Q |
| |
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|| |
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|
| T |
17458077 |
tc |
17458078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 331
Target Start/End: Complemental strand, 27647030 - 27646925
Alignment:
| Q |
227 |
ttaaattgatgtctaatcttaaccgt-cgttctaatattaatggttgagatttattacagcatcaaactgtgtgcttttttactgctccaaatcttgatc |
325 |
Q |
| |
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||||| || |||||||||| |||||| | || | |||| ||||| || |||||||||||||| |||||||||||||||||||| || ||||||| ||||| |
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| T |
27647030 |
ttaaactgctgtctaatctgaaccgttcattttgatatcaatggctgtgatttattacagcaccaaactgtgtgcttttttacagcaccaaatcctgatc |
27646931 |
T |
|
| Q |
326 |
caaaaa |
331 |
Q |
| |
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| |||| |
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|
| T |
27646930 |
cgaaaa |
27646925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 304
Target Start/End: Complemental strand, 36711673 - 36711563
Alignment:
| Q |
195 |
tttatatgaacggtctagatcatccaactgtattaaattgatgtctaatcttaaccgtc-gttctaatattaatggttgagatttattacagcatcaaac |
293 |
Q |
| |
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||||||| |||||| |||||| ||||||| ||||| ||||||||||||| || || ||||| ||||||| || || |||||||||||||| ||||| |
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| T |
36711673 |
tttatatcaacggttcagatcactcaactgtgttaaactgatgtctaatctaaattgtttgttctgatattaacggctgggatttattacagcaccaaac |
36711574 |
T |
|
| Q |
294 |
tgtgtgctttt |
304 |
Q |
| |
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||||||||||| |
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|
| T |
36711573 |
tgtgtgctttt |
36711563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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