View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_35 (Length: 320)
Name: NF12877_high_35
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_35 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 4263 - 3997
Alignment:
| Q |
11 |
gagcacagatattccatataggttgacggacgg--tgtattcttcctctgaaggagatgtcattttagacttttagtcattccatataagtgttaattaa |
108 |
Q |
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| T |
4263 |
gagcactgatattccatataggttgacagacggggtgtattcttcctctgaaggagatgtcattttag--------tcattccatataagtgttaattaa |
4172 |
T |
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| Q |
109 |
gaatcaccctcattaggtccatcttgcttttgattttagtcattagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgctct |
208 |
Q |
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| T |
4171 |
gaatcaccctcattaggtccatcttgcttttgattttagtcattagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgctct |
4072 |
T |
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| Q |
209 |
ttcttcaggtttggttggggtgtttttgggcattttgtttgttccattcctcatgtacattgattacctttttct |
283 |
Q |
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| T |
4071 |
ttctttaggtttggttggggtgtttttgggcattttgtgtgttccattcctcatgtacattgattacctttttct |
3997 |
T |
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Back To:
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Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 3896609 - 3896332
Alignment:
| Q |
11 |
gagcacagatattccatataggttgacggacgg--tgtattcttcctctgaaggagatgtcatttta--gac-ttttagtcattccatataagtgttaat |
105 |
Q |
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| T |
3896609 |
gagcactgatattccatataggttgacggacggggtgtattcttcctctgaaggagatgtgctatgaatgtcattttagtcattccatataagtattatt |
3896510 |
T |
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| Q |
106 |
taagaatcaccctcattaggtccatcttgcttttgattttagtcattagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgc |
205 |
Q |
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| T |
3896509 |
taagaatcaccctcattaggtccattttgcttttgattttagtcattagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgc |
3896410 |
T |
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| Q |
206 |
tctttcttcaggtttggttggggtgtttttgggcattttgtttgttccattcctcatgtacattgattacctttttct |
283 |
Q |
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| T |
3896409 |
tctttcttcaggtttggttggggtgtttttgggcattttgtgtgttccattcctcatgtacattgattacctttttct |
3896332 |
T |
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