View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_36 (Length: 320)
Name: NF12877_high_36
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_36 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 320
Target Start/End: Original strand, 24690380 - 24690691
Alignment:
| Q |
6 |
agcagcacagaaccagctgaatgcacattgcagcctcatcattattgttgtatttaccaagacttaaaaaactgaaatgaaacaacaatagcatcatgtg |
105 |
Q |
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| T |
24690380 |
agcaccacaaaaccagctgaatgcacattgcagcctcatcattattgt---atttaccaagacttaaaaaactgaaatgaaacaacaatagcatcatgtg |
24690476 |
T |
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| Q |
106 |
gacttcgagagtcatcaaaacaaataatatttcagtgtaactttgttagtgaactgaagatccatgatctgcatactgaacctcataatattcatactgg |
205 |
Q |
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| T |
24690477 |
gacttcgagagtcatcaaaacaaataatatttcagtgtaactttgttagtgaactgaagatccatgatctgcatactgaacctcataatattcatactgg |
24690576 |
T |
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| Q |
206 |
tcatctaggcctgcgcagtgatggtctgatgattactgcactcacattgcgaagagttgatcttaagaactggtccataccactgattcacacttcagag |
305 |
Q |
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| T |
24690577 |
tcatctaggcctgcgcagtgatggtctgatgattactgcactcacattgcgaagagttgatcttaagaactggtccataccactgattcacacttcagag |
24690676 |
T |
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| Q |
306 |
caaggaccatcagtt |
320 |
Q |
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| T |
24690677 |
caaggaccatcagtt |
24690691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 24717745 - 24717826
Alignment:
| Q |
18 |
ccagctgaatgcacattgcagcctcatcattat-tgttgtatttaccaagacttaaaaaactgaaatgaaacaacaatagca |
98 |
Q |
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| T |
24717745 |
ccagctgagtgcacactgcagtctcatcaatagctgatgtattcaacaagacttaaaaaactgaaacaaaacaacaatagca |
24717826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 24630845 - 24630879
Alignment:
| Q |
72 |
aaaaactgaaatgaaacaacaatagcatcatgtgg |
106 |
Q |
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| T |
24630845 |
aaaaactgaaatgaaacaacaatagcattatgtgg |
24630879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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