View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_39 (Length: 301)
Name: NF12877_high_39
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_39 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 757936 - 757653
Alignment:
| Q |
18 |
actatttggtccacagtttattgttttaggggatcacggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttatta |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
757936 |
actatttggtccacagtttattgttttaagggatcacggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttatta |
757837 |
T |
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| Q |
118 |
tttgtcctataacaacaatggtttttgcttgatttcagtgttgttttctacatattgtttggtcttagcacaaatctacggcataatacccacatgcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
757836 |
tttgtcctataacaacaatggtttttgcttgatttcagtgttgttttctacatattgtttggtcttagcacaaatctacggcataatacccacatgcatt |
757737 |
T |
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| Q |
218 |
attactaagggattccatgtgggtcaagtaagtagaatttttatttgttacttggttttctttgtcatttgataaaataacttt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |
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| T |
757736 |
attactaagggattccatgtgggtcaagtaagtagaatttttatttgttacttgtttttctttttcatttgataaaaaaacttt |
757653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 36989440 - 36989716
Alignment:
| Q |
18 |
actatttggtccacagtttattgttttaggggatcacggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttatta |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989440 |
actatttggtccacagtttattgttttaagggatcacggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttatta |
36989539 |
T |
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| Q |
118 |
tttgtcctataacaacaatggtttttgcttgatttcagtgttgttttctacatattgtttggtcttagcacaaatctacggcataatacccacatgcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989540 |
tttgtcctataacaacaatggtttttgcttgatttcagtgatgttttctacatattgtttggtcttagcacaaatctacggcataatacccacatgcatt |
36989639 |
T |
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| Q |
218 |
attactaagggattccatgtgggtcaagtaagtagaatttttatttgttacttggttttctttgtcatttgataaaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
36989640 |
attactaagggattccatgtgggtcaagtaagtagaatttttatttgttacttgtttttctttttcatttgataaaa |
36989716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 37014879 - 37015156
Alignment:
| Q |
18 |
actatttggtccacagtttattgttttaggggatcacggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttccat-gtatactgttatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
37014879 |
actatttggtccacagtttattgttttaggggatcacggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttcaattgtatactgttatt |
37014978 |
T |
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| Q |
117 |
atttgtcctataacaacaatggtttttgcttgatttcagtgttgttttctacatattgtttggtcttagcacaaatctacggcataatacccacatgcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014979 |
atttgtcctataacaacaatggtttttgcttgatttcagtgctgttttctacatattgtttggtcttagcacaaatctacggcataatacccacatgcat |
37015078 |
T |
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| Q |
217 |
tattactaagggattccatgtgggtcaagtaagtagaatttttatttgttacttggttttctttgtcatttgataaaa |
294 |
Q |
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| T |
37015079 |
tattactaagggattccatgtgggtcaagtaagtagaatttttatttgttacttgtttttctttttcatttgataaaa |
37015156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 39160861 - 39160937
Alignment:
| Q |
119 |
ttgtcctataacaacaatggtttttgcttgatttcagtgttgttttctacatattgtttggtcttagcacaaatcta |
195 |
Q |
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||||||| ||||||||||| | |||||||||||||||||| ||||| ||| || ||||||||||||||||||||| |
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| T |
39160861 |
ttgtcctgtaacaacaatgttgtttgcttgatttcagtgtcattttcaacacgttttttggtcttagcacaaatcta |
39160937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 27006555 - 27006625
Alignment:
| Q |
125 |
tataacaacaatggtttttgcttgatttcagtgttgttttctacatattgtttggtcttagcacaaatcta |
195 |
Q |
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|||||||||| |||| ||||||||||||||| || |||||| || |||||||||| | |||||||||||| |
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| T |
27006555 |
tataacaacattggtgtttgcttgatttcagcgtcgttttcatcacattgtttggtatcagcacaaatcta |
27006625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 32898567 - 32898595
Alignment:
| Q |
57 |
tgtaagtatatatgtcacatgaagtcatg |
85 |
Q |
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| T |
32898567 |
tgtaagtatatatgtcacatgaagtcatg |
32898595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 36874876 - 36874824
Alignment:
| Q |
141 |
tttgcttgatttcagtgttgttttctacatattgtttggtcttagcacaaatc |
193 |
Q |
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| T |
36874876 |
tttgcttgatttcagtgtcgttttcaacacgttgtttggtctcagaacaaatc |
36874824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 19180126 - 19179948
Alignment:
| Q |
23 |
ttggtccacagtttattgttttaggggatcacggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgt |
122 |
Q |
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|||||||||||||| | || |||| ||||||| ||||| |||||||||| ||||| ||| ||||||| ||||||||| | |||||||||||||||| | |
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| T |
19180126 |
ttggtccacagtttcattttataggagatcacgatgtaactatatatgtcgcatgaggtcgtgtttttctttgccttcaaactatactgttattatttct |
19180027 |
T |
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| Q |
123 |
cctataacaacaatggtttttgcttgatttcagtgttgttttctacatattgtttggtcttagcacaaatctacggcat |
201 |
Q |
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|| |||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19180026 |
ccaataacaacaatggtttttgcttgatttcagcgtcgttttcaacatattgtttggtcttagcacaaatctacggcat |
19179948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 19179823 - 19179765
Alignment:
| Q |
222 |
ctaagggattccatgtgggtcaagtaagtagaatttttatttgttacttggttttcttt |
280 |
Q |
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| T |
19179823 |
ctaagggattccatttggaataagtaagtagaatttttatttgttacttgtttttcttt |
19179765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 31824719 - 31824792
Alignment:
| Q |
124 |
ctataacaacaat--ggtttttgcttgatttcagtgttgttttctacatattgtttggtcttagcacaaatcta |
195 |
Q |
| |
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||||||||||||| ||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |
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| T |
31824719 |
ctataacaacaatatggtgcttgcttgatttcagtgtcgttttgaacacgttgtttggtcttagcacaaatcta |
31824792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 32116878 - 32116910
Alignment:
| Q |
163 |
ttctacatattgtttggtcttagcacaaatcta |
195 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
32116878 |
ttctacacattgtttggtcttagcacaaatcta |
32116910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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