View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_42 (Length: 292)
Name: NF12877_high_42
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36948124 - 36947882
Alignment:
| Q |
1 |
atgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36948124 |
atgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctac |
36948025 |
T |
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| Q |
101 |
tgatgcagtgattataagggttgaaaccaatatcagtgtctctaccatgtctttgaatgtggggttggggtcttctgccgataaatattgtggtacaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36948024 |
tgatgcagtgattataagggttgaaaccaatatcagtgtctctaccatgtctttaaatgtggggttggggacttctgccgataaatattgtggtacaatg |
36947925 |
T |
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| Q |
201 |
ttgttggggactttttctgctctgtccctatatctatccaaac |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36947924 |
ttgttggggactttttctgctctgtccctatatctatccaaac |
36947882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 37069835 - 37069986
Alignment:
| Q |
1 |
atgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctac |
100 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37069835 |
atgatattgtgatgaagataatgaaagcttggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctac |
37069934 |
T |
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| Q |
101 |
tgatgcagtgattataagggttgaaaccaatatcagtgtctctaccatgtct |
152 |
Q |
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| T |
37069935 |
tgaagcagtgattataagtgttgaaaccaatgtgagtgtctctaccctgtct |
37069986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 37079595 - 37079739
Alignment:
| Q |
1 |
atgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctac |
100 |
Q |
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|||||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37079595 |
atgatattgtgatgaatataatgaaaacatggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctac |
37079694 |
T |
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| Q |
101 |
tgatgcagtgattataagggttgaaaccaatatcagtgtctctac |
145 |
Q |
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||| ||||||||||||||||||||||||||| | ||||||||||| |
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| T |
37079695 |
tgaagcagtgattataagggttgaaaccaatgtgagtgtctctac |
37079739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 36956200 - 36956074
Alignment:
| Q |
1 |
atgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctac |
100 |
Q |
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||||||||||||||||||||||||| | || ||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
36956200 |
atgatattgtgatgaagataatgaaaacatggaacattgcatgacatagattgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctac |
36956101 |
T |
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| Q |
101 |
tgatgcagtgattataagggttgaaac |
127 |
Q |
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|||||| ||||||||||| |||||||| |
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| T |
36956100 |
tgatgctgtgattataagtgttgaaac |
36956074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 36935346 - 36935220
Alignment:
| Q |
1 |
atgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctac |
100 |
Q |
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|||||| |||||||||||||||||| || |||||||||| ||||||||| |||| ||||||||| |||||||||| |||||| || |||||||||||||| |
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| T |
36935346 |
atgatactgtgatgaagataatgaaagcatgaaacattgtatgacatagattgtgtgcttttccttctgcttcacatggaacggctaaacatgctgctac |
36935247 |
T |
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| Q |
101 |
tgatgcagtgattataagggttgaaac |
127 |
Q |
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||| |||||||||||||| |||||||| |
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| T |
36935246 |
tgaagcagtgattataagtgttgaaac |
36935220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 36971718 - 36971641
Alignment:
| Q |
77 |
tggaacagcaaaacatgctgctactgatgcagtgattataagggttgaaaccaatatcagtgtctctaccatgtcttt |
154 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36971718 |
tggaacaccaaaacatgctgctactgatgcagtgattataagtgttgaaaccaatatcagtgtctctaccatgtcttt |
36971641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 12493626 - 12493750
Alignment:
| Q |
3 |
gatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactg |
102 |
Q |
| |
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||||||||||||||||||||||| || || |||||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
12493626 |
gatattgtgatgaagataatgaaagcatggaacattgcatgacataggctgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctactg |
12493725 |
T |
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| Q |
103 |
atgcagtgattataagggttgaaac |
127 |
Q |
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| T |
12493726 |
aagcagtgattataagtgttgaaac |
12493750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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