View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_high_46 (Length: 260)

Name: NF12877_high_46
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_high_46
NF12877_high_46
[»] chr7 (2 HSPs)
chr7 (12-242)||(33867831-33868061)
chr7 (15-130)||(29266113-29266228)
[»] chr8 (2 HSPs)
chr8 (12-242)||(5769988-5770218)
chr8 (18-130)||(24471437-24471550)
[»] scaffold1234 (1 HSPs)
scaffold1234 (41-242)||(376-577)
[»] chr5 (2 HSPs)
chr5 (12-130)||(21269194-21269312)
chr5 (12-130)||(21271208-21271326)
[»] chr3 (3 HSPs)
chr3 (13-130)||(25435297-25435414)
chr3 (13-116)||(50828292-50828395)
chr3 (13-116)||(50847458-50847561)
[»] chr6 (2 HSPs)
chr6 (21-130)||(443035-443143)
chr6 (155-221)||(31449415-31449483)
[»] chr1 (1 HSPs)
chr1 (151-229)||(6522653-6522732)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 33868061 - 33867831
Alignment:
Q  12 atgaactgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33868061 atgaactgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgtcatatgcaccaaaacatcattgcaaaggttttctgatcct 33867962  T
Q  112 gcacattcagtccctgcatcataaattctcaacttcatattagaaaagcagtatcataaattcttgtttctcttatatattttgacagtaccatatatat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33867961 gcacattcagtccctgcatcataaattctcaacttcatattagaaaagcagtatcataaattcttgtttctcttatatattttgacagtaccatatatat 33867862  T
Q  212 caataacaaacacaatttaagcagcccaagt 242  Q
    |||||||||||||||||||||||||||||||    
T  33867861 caataacaaacacaatttaagcagcccaagt 33867831  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 29266113 - 29266228
Alignment:
Q  15 aactgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcctgca 114  Q
    |||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29266113 aactgaaattgttggttattcgtttgattgtgccagaccttttcatttcaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcctgca 29266212  T
Q  115 cattcagtccctgcat 130  Q
    ||||||||||||||||    
T  29266213 cattcagtccctgcat 29266228  T

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Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 5769988 - 5770218
Alignment:
Q  12 atgaactgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5769988 atgaactgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcct 5770087  T
Q  112 gcacattcagtccctgcatcataaattctcaacttcatattagaaaagcagtatcataaattcttgtttctcttatatattttgacagtaccatatatat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5770088 gcacattcagtccctgcatcataaattctcaacttcatattagaaaagcagtatcataaattcttgtttctcttgtatattttgacagtaccatatatat 5770187  T
Q  212 caataacaaacacaatttaagcagcccaagt 242  Q
    ||||| |||||||||||||||||||||||||    
T  5770188 caatagcaaacacaatttaagcagcccaagt 5770218  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 24471550 - 24471437
Alignment:
Q  18 tgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcacc-aaaacatcattgcaaaggttttctgatcctgcaca 116  Q
    |||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  24471550 tgaaattgttgcttcttcgtttgattgtgccataatttttcatttcaacgacgtcatatgcaccaaaaacatcattgcaaaggttttctgatcctgcaca 24471451  T
Q  117 ttcagtccctgcat 130  Q
    |||||||| |||||    
T  24471450 ttcagtccttgcat 24471437  T

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Target: scaffold1234 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 41 - 242
Target Start/End: Complemental strand, 577 - 376
Alignment:
Q  41 attgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcctgcacattcagtccctgcatcataaattct 140  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  577 attgtgccagactttttcattttaacgacgccatatgaaccaaaacataattgcaaaggttttctaatcctgcacattcagtccctgcatcataaattct 478  T
Q  141 caacttcatattagaaaagcagtatcataaattcttgtttctcttatatattttgacagtaccatatatatcaataacaaacacaatttaagcagcccaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  477 caacttcatattagaaaagcagtatcataaattcttgtttctcttgtatattttgacaataccatatatatcaattgcaaacacaatttaagcagcccaa 378  T
Q  241 gt 242  Q
    ||    
T  377 gt 376  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 21269312 - 21269194
Alignment:
Q  12 atgaactgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||    
T  21269312 atgaactgaaattgttgcttcttcgtttgattgtgccagactttttcatttcaacgacaccatatgcaccaaaacatcattgcaaagatcttctgatcct 21269213  T
Q  112 gcacattcagtccctgcat 130  Q
    ||||||| ||||| |||||    
T  21269212 gcacatttagtccgtgcat 21269194  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 21271326 - 21271208
Alignment:
Q  12 atgaactgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||    
T  21271326 atgaactgaaattgttgcttcttcgtttgattgtgccagactttttcatttcaacgacaccatatgcaccaaaacatcattgcaaagatcttctgatcct 21271227  T
Q  112 gcacattcagtccctgcat 130  Q
    ||||||| ||||| |||||    
T  21271226 gcacatttagtccgtgcat 21271208  T

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Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 25435414 - 25435297
Alignment:
Q  13 tgaactgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcctg 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  25435414 tgaactgaaattgttgcttctttgtttgattgtgccagactttttcatttcaacgacgccatgtgcactaaaacatcagtgcaaaggttttctgatcctg 25435315  T
Q  113 cacattcagtccctgcat 130  Q
    ||||| ||||||||||||    
T  25435314 cacatacagtccctgcat 25435297  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 50828292 - 50828395
Alignment:
Q  13 tgaactgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcctg 112  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  50828292 tgaactgaaattgttgcttctttgtttgattgtaccagactttttcatttcaacgacgccatatgcactaaaacatcactgcaaaggttttccgatcctg 50828391  T
Q  113 caca 116  Q
    ||||    
T  50828392 caca 50828395  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 50847561 - 50847458
Alignment:
Q  13 tgaactgaaattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcctg 112  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  50847561 tgaactgaaattgttgcttctttgtttgattgtaccagactttttcatttcaacgacgccatatgcactaaaacatcactgcaaaggttttccgatcctg 50847462  T
Q  113 caca 116  Q
    ||||    
T  50847461 caca 50847458  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 443143 - 443035
Alignment:
Q  21 aattgttgcttcttcgtttgattgtgccagactttttcattttaacgacgccatatgcaccaaaacatcattgcaaaggttttctgatcctgcacattca 120  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||| ||||||||| |    
T  443143 aattgttgcttcttagtttgattgtgccagactttttcatttcatcgacaccatatgcaccaaaacatcattgcaaaggtcttctgat-ctgcacattta 443045  T
Q  121 gtccctgcat 130  Q
    ||||||||||    
T  443044 gtccctgcat 443035  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 31449483 - 31449415
Alignment:
Q  155 aaaagcagtatcataaattcttgtttctctt--atatattttgacagtaccatatatatcaataacaaa 221  Q
    |||||||||| |||||| |||| ||||| ||  |||||| ||||||||||||||||||| |||| ||||    
T  31449483 aaaagcagtagcataaaatcttatttcttttgtatatatgttgacagtaccatatatataaatagcaaa 31449415  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 6522732 - 6522653
Alignment:
Q  151 ttagaaaagcagtatcataaattcttgtttctcttatatattttgacagtaccatatatatcaataac-aaacacaattt 229  Q
    |||||| | ||||| |||||  |||| |||||||| ||||||||||||||| ||| |||||||||| | |||||||||||    
T  6522732 ttagaataacagtagcataatatcttatttctcttgtatattttgacagtagcatctatatcaatagcaaaacacaattt 6522653  T

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