View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_high_5 (Length: 624)

Name: NF12877_high_5
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_high_5
NF12877_high_5
[»] chr5 (7 HSPs)
chr5 (1-366)||(36192221-36192588)
chr5 (25-120)||(11135904-11135999)
chr5 (401-520)||(34732299-34732418)
chr5 (361-520)||(32487132-32487291)
chr5 (361-550)||(2866764-2866955)
chr5 (555-614)||(36192883-36192942)
chr5 (551-602)||(16948337-16948388)
[»] chr4 (5 HSPs)
chr4 (20-366)||(7281422-7281774)
chr4 (440-520)||(22228423-22228503)
chr4 (361-520)||(55406503-55406662)
chr4 (551-602)||(56193650-56193701)
chr4 (318-366)||(53722836-53722882)
[»] chr3 (6 HSPs)
chr3 (364-525)||(1539622-1539782)
chr3 (361-551)||(2455819-2456009)
chr3 (364-460)||(50761123-50761219)
chr3 (468-515)||(50763234-50763281)
chr3 (551-598)||(23624894-23624941)
chr3 (444-520)||(19466163-19466239)
[»] chr2 (3 HSPs)
chr2 (364-551)||(38120845-38121032)
chr2 (361-550)||(40934653-40934844)
chr2 (555-602)||(44285372-44285419)
[»] chr8 (3 HSPs)
chr8 (439-516)||(12568105-12568182)
chr8 (361-518)||(38545597-38545754)
chr8 (403-520)||(30773517-30773638)
[»] scaffold0343 (1 HSPs)
scaffold0343 (361-520)||(8241-8399)
[»] chr6 (2 HSPs)
chr6 (551-601)||(27739239-27739289)
chr6 (561-602)||(6086921-6086962)
[»] chr1 (2 HSPs)
chr1 (551-590)||(34501172-34501211)
chr1 (466-518)||(34501409-34501461)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 36192221 - 36192588
Alignment:
Q  1 cacgatggttttaaagactgcatgtattgtattttctcaattatgttcaacctgctctcaagtctcacctattggttctctctct--tccttctgtctat 98  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  36192221 cacgatggttttaaagactgcatgtattgtattttttcaattatgttcaacctgctctcaagtctcacctattggctctctctctcttccttctgtctat 36192320  T
Q  99 ctttcaaccgtcatcatctttcgggctctcaccaccacttgttatagtatcaatatcttaatttgtttttccatcaannnnnnncttcttcttttgagta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  36192321 ctttcaaccgtcatcatctttcgggctctcaccaccacttgttatagtatcaatatcttaatttgtttttccatcaatttttttcttcttcttttgagta 36192420  T
Q  199 gttcgaatttcatccacaaaaccacaccaagttcatagtagaaaatggaagtgttagttttaagagatagaagtggtaaaatggtacagatgaatttaat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36192421 gttcgaatttcatccacaaaaccacaccaagttcatagtagaaaatggaagtgtaagttttaagagatagaagtggtaaaatggtacagatgaatttaat 36192520  T
Q  299 ttcattttgggtagttatgaatttcatcaacaaagaataaaaggagaaaaatatgatatgaatcaatt 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36192521 ttcattttgggtagttatgaatttcatcaacaaagaataaaaggagaaaaatatgatatgaaacaatt 36192588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 11135904 - 11135999
Alignment:
Q  25 tattgtattttctcaattatgttcaacctgctctcaagtctcacctattggttctctctcttccttctgtctatctttcaaccgtcatcatctttc 120  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  11135904 tattgtattttttcaattatgttcaacctgctctcaagtctcaccttttggttctctcttttccttctgtctatcttttaacagtcatcatctttc 11135999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 401 - 520
Target Start/End: Complemental strand, 34732418 - 34732299
Alignment:
Q  401 caatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaattcataattttgttaataacttaaaacggatttatatata 500  Q
    |||| |||||||||||||  |||||||   ||||||  | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34732418 caataggaattgaaccactgttctctatggtagttttagaaaaataaaccactaggctaattcataattttgttaatatcttaaaacggatttatatata 34732319  T
Q  501 ttctaaaaatatttggcacc 520  Q
    ||||||||| ||||||||||    
T  34732318 ttctaaaaacatttggcacc 34732299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 361 - 520
Target Start/End: Original strand, 32487132 - 32487291
Alignment:
Q  361 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 460  Q
    ||||||||||||||||||||||||||       ||| ||  ||||||||| |||||||| ||| ||| | | ||| | ||||||||||||||||||||||    
T  32487132 tcaattgtattattaatactttactcaaaaaaagaggtcctaatgggaatcgaaccaccgttccctatagttgttccaggaaaataaaccactaggctaa 32487231  T
Q  461 ttcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcacc 520  Q
    ||||| ||||  ||||||  ||||||| ||| ||||||||||||||||||||||||||||    
T  32487232 ttcattatttcattaatattttaaaactgatatatatatattctaaaaatatttggcacc 32487291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 361 - 550
Target Start/End: Complemental strand, 2866955 - 2866764
Alignment:
Q  361 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 460  Q
    ||||||||||||||||||||||||||       ||| ||  ||||||||| |||||||| ||| ||| | | ||||| ||||||||||||||||||||||    
T  2866955 tcaattgtattattaatactttactcaaaaaaagaggtcctaatgggaatcgaaccaccgttccctatagttgtttcaggaaaataaaccactaggctaa 2866856  T
Q  461 ttcataattttgttaataacttaaaacgg--atttatatatattctaaaaatatttggcaccttcagnnnnnnngttcaagatccgccactg 550  Q
    ||||| ||||   |||||  ||||||| |  || ||||||||||||||||||||||||||||  |||       ||||||||||||||||||    
T  2866855 ttcattatttcactaatattttaaaactgatatatatatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactg 2866764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 555 - 614
Target Start/End: Original strand, 36192883 - 36192942
Alignment:
Q  555 ccaagttacctataattatcgtattatccataatttatcaaatgttacgtctgtgctgct 614  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  36192883 ccaagttacctataattatcgtattatccataatttatcgaatgttacgtccgtgttgct 36192942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 602
Target Start/End: Complemental strand, 16948388 - 16948337
Alignment:
Q  551 gcccccaagttacctataattatcgtattatccataatttatcaaatgttac 602  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  16948388 gccctcaagttacctataattatcatattatccataatttatcatatgttac 16948337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 225; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 7281422 - 7281774
Alignment:
Q  20 gcatgtattgtattttct-caattatgttcaacctgctctcaagtctcacctattggttctctctcttccttctgtctatctttcaaccgtcatcatctt 118  Q
    |||||||||||||||| | |||||||||| |||||||||||||||||||||| ||||||||||||  ||||| ||||||||||| |||||||||||||||    
T  7281422 gcatgtattgtatttttttcaattatgtttaacctgctctcaagtctcaccttttggttctctct--tccttttgtctatcttttaaccgtcatcatctt 7281519  T
Q  119 tcgggctctcaccac-------cacttgttatagtatcaatatcttaatttgtttttccatcaannnnnnncttcttcttttgagtagttcgaatttcat 211  Q
    || ||||||||||||       ||||||||||| ||||||||  ||||||||||||||||||||       |||||||||| ||||||||||||||||||    
T  7281520 tcaggctctcaccactcgccaccacttgttatattatcaatactttaatttgtttttccatcaatttttttcttcttctttcgagtagttcgaatttcat 7281619  T
Q  212 ccacaaaaccacaccaagttcatagtagaaaatggaagtgttagttttaagagatagaagtggtaaaatggtacagatgaatttaatttcattttgggta 311  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  7281620 ccacaaaaccacaacaagttcatagtagaaaatggaagtgtaagttttaagagatagaagtggtaaaatggaacagatgaatttaatttcattttgggga 7281719  T
Q  312 gttatgaatttcatcaacaaagaataaaaggagaaaaatatgatatgaatcaatt 366  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  7281720 gttatgactttcatcaacaaagaataaaaggagaaaaatattatatgaatcaatt 7281774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 22228423 - 22228503
Alignment:
Q  440 gaaaataaaccactaggctaattcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcacc 520  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  22228423 gaaaataaaccactaggctaattcataattttattaatatcttaaaacggatttatatatattctaataatatttggcacc 22228503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 361 - 520
Target Start/End: Complemental strand, 55406662 - 55406503
Alignment:
Q  361 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 460  Q
    ||||||||||||||||||||||||||       ||| ||  ||||||||| |||||||| ||| ||| | | ||| | ||||||||||||||||||||||    
T  55406662 tcaattgtattattaatactttactcaaaagaagaggtcctaatgggaatcgaaccaccgttccctatagttgttccaggaaaataaaccactaggctaa 55406563  T
Q  461 ttcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcacc 520  Q
    ||||| ||||  ||||||  ||||||| ||| ||||||||||||||||||||||||||||    
T  55406562 ttcattatttcattaatattttaaaactgatatatatatattctaaaaatatttggcacc 55406503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 602
Target Start/End: Original strand, 56193650 - 56193701
Alignment:
Q  551 gcccccaagttacctataattatcgtattatccataatttatcaaatgttac 602  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  56193650 gcccccaatttacctataattatcatattatccataatttatcaaatgttac 56193701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 53722882 - 53722836
Alignment:
Q  318 aatttcatcaacaaagaataaaaggagaaaaatatgatatgaatcaatt 366  Q
    ||||||||||||||||||  |||||||||||| |||||||| |||||||    
T  53722882 aatttcatcaacaaagaa--aaaggagaaaaacatgatatggatcaatt 53722836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 364 - 525
Target Start/End: Original strand, 1539622 - 1539782
Alignment:
Q  364 attgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaattc 463  Q
    |||||||||||||||||||||||       ||| |  |||||||||||||||||| ||||||||   ||||||| |||||||||||||||||||||||||    
T  1539622 attgtattattaatactttactcaaaaaaagaggttccaatgggaattgaaccac-attctctatggtagtttcaggaaaataaaccactaggctaattc 1539720  T
Q  464 ataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcaccttcag 525  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  1539721 ataattttgtcaataacttaaaacggatttatatatattctaaacatatttggcaccctcag 1539782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 361 - 551
Target Start/End: Original strand, 2455819 - 2456009
Alignment:
Q  361 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 460  Q
    ||||||||||||||||||||||||||       ||| ||  |||||||||||||||||| ||| ||| | | ||| | ||||||||||||||||||||||    
T  2455819 tcaattgtattattaatactttactcaaaaaaagaggtcctaatgggaattgaaccaccgttccctatagttgttccaggaaaataaaccactaggctaa 2455918  T
Q  461 ttcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcaccttcagnnnnnnngttcaagatccgccactgg 551  Q
    ||||| ||||  ||||||  ||||||| ||| ||||||||||||||||||||||||||||  |||       |||||||||||||||||||    
T  2455919 ttcattatttcattaatattttaaaactgatatatatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactgg 2456009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 460
Target Start/End: Original strand, 50761123 - 50761219
Alignment:
Q  364 attgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 460  Q
    |||||||||||||||||||||||       ||| || ||||||||||||||||||  |||||||   ||||||| ||||||||||||||||| ||||    
T  50761123 attgtattattaatactttactcaaaaaaagaggtcccaatgggaattgaaccactgttctctatggtagtttcaggaaaataaaccactagactaa 50761219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 515
Target Start/End: Original strand, 50763234 - 50763281
Alignment:
Q  468 ttttgttaataacttaaaacggatttatatatattctaaaaatatttg 515  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||    
T  50763234 ttttattaataacttaaaacggatttatatatattctaaacatatttg 50763281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 598
Target Start/End: Complemental strand, 23624941 - 23624894
Alignment:
Q  551 gcccccaagttacctataattatcgtattatccataatttatcaaatg 598  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||||    
T  23624941 gcccccaaattacctataactatcatattatccataatttatcaaatg 23624894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 520
Target Start/End: Complemental strand, 19466239 - 19466163
Alignment:
Q  444 ataaaccactaggctaattcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcacc 520  Q
    |||||||||||| ||||||| ||||| ||||||||    ||||| | || ||||||||||  |||||||||||||||    
T  19466239 ataaaccactagactaattcttaattctgttaatattccaaaactgtttaatatatattcataaaatatttggcacc 19466163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 364 - 551
Target Start/End: Original strand, 38120845 - 38121032
Alignment:
Q  364 attgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaattc 463  Q
    ||||||||||||||||||||||        ||| || |||||||| |||||||||| |||||||   ||||| | |||||||||||||||||||||||||    
T  38120845 attgtattattaatactttactaaaacaaagaggtcccaatgggatttgaaccaccgttctctatggtagttccaggaaaataaaccactaggctaattc 38120944  T
Q  464 ataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcaccttcagnnnnnnngttcaagatccgccactgg 551  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||  |||       |||||||||||||||||||    
T  38120945 ataattttgttaatatcttaaaacagatttatatatattttaaaaataattggcacccccagaaaaaaagttcaagatccgccactgg 38121032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 361 - 550
Target Start/End: Complemental strand, 40934844 - 40934653
Alignment:
Q  361 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 460  Q
    ||||||||||||||||||||||||||       ||| ||  | ||||||| |||||||| ||| ||| | | |||   ||||||||||||||||||||||    
T  40934844 tcaattgtattattaatactttactcaaaaaaagaggtcttactgggaatcgaaccaccgttccctatagttgttctaggaaaataaaccactaggctaa 40934745  T
Q  461 ttcataattttgttaataacttaaaacgg--atttatatatattctaaaaatatttggcaccttcagnnnnnnngttcaagatccgccactg 550  Q
    ||||| ||||  ||||||  ||||||| |  || ||||||||||||||||||||||||||||  |||       ||||||||||||||||||    
T  40934744 ttcattatttcattaatattttaaaactgatatatatatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactg 40934653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Original strand, 44285372 - 44285419
Alignment:
Q  555 ccaagttacctataattatcgtattatccataatttatcaaatgttac 602  Q
    |||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  44285372 ccaagttacctataattatcatattgtccataatttgtcaaaagttac 44285419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 439 - 516
Target Start/End: Complemental strand, 12568182 - 12568105
Alignment:
Q  439 ggaaaataaaccactaggctaattcataattttgttaataacttaaaacggatttatatatattctaaaaatatttgg 516  Q
    ||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  12568182 ggaaaataaactactaagctaattcataatttcgttaatatcttaaaacggatttatatatattctaaaaatatttgg 12568105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 361 - 518
Target Start/End: Complemental strand, 38545754 - 38545597
Alignment:
Q  361 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 460  Q
    |||||||||||||||||||||||||        ||| ||  |||||||||  ||||||| ||| ||| | | ||| | |||||||||||||||| |||||    
T  38545754 tcaattgtattattaatactttactaaaaaaaagaggtcctaatgggaatcaaaccaccgttccctatagttgttccaggaaaataaaccactacgctaa 38545655  T
Q  461 ttcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggca 518  Q
    ||||| ||||  ||||||  ||||||| ||| ||||||||||||||||||||||||||    
T  38545654 ttcattatttcattaatattttaaaactgatatatatatattctaaaaatatttggca 38545597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 520
Target Start/End: Original strand, 30773517 - 30773638
Alignment:
Q  403 atgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaattcataattttgttaat----aacttaaaacggatttatata 498  Q
    ||||||||||||||||| || ||||   | || || ||| |||||| || ||| |||||||||||||||||| ||    | |||||||| ||||||||||    
T  30773517 atgggaattgaaccaccgttttctatggtggtctcaggacaataaatcattagactaattcataattttgtttatatcaatcttaaaacagatttatata 30773616  T
Q  499 tattctaaaaatatttggcacc 520  Q
    ||||||||||||||||||||||    
T  30773617 tattctaaaaatatttggcacc 30773638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 361 - 520
Target Start/End: Complemental strand, 8399 - 8241
Alignment:
Q  361 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 460  Q
    ||||||||||||||||||||||||||       ||| ||  |||||||||  ||||||| ||| ||| | | ||| | ||||||||||||||||||||||    
T  8399 tcaattgtattattaatactttactcaaaaaaagaggtcctaatgggaatcaaaccacc-ttccctatagttgttccaggaaaataaaccactaggctaa 8301  T
Q  461 ttcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcacc 520  Q
    ||||| ||||  ||||||  ||||||| ||| ||||||||||| ||||||||||||||||    
T  8300 ttcattatttcattaatattttaaaactgatatatatatattcaaaaaatatttggcacc 8241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 601
Target Start/End: Complemental strand, 27739289 - 27739239
Alignment:
Q  551 gcccccaagttacctataattatcgtattatccataatttatcaaatgtta 601  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||| ||||||    
T  27739289 gcccccaaattacctataattatcatattatccatactttatcatatgtta 27739239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 602
Target Start/End: Original strand, 6086921 - 6086962
Alignment:
Q  561 tacctataattatcgtattatccataatttatcaaatgttac 602  Q
    |||||||||||||| ||||||||||||| ||||| |||||||    
T  6086921 tacctataattatcatattatccataatatatcatatgttac 6086962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 590
Target Start/End: Original strand, 34501172 - 34501211
Alignment:
Q  551 gcccccaagttacctataattatcgtattatccataattt 590  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  34501172 gcccccaagttacctataattatcatattatccgtaattt 34501211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 34501409 - 34501461
Alignment:
Q  466 aattttgttaataacttaaaacggatttatatatattctaaaaatatttggca 518  Q
    |||||||||| || |||||||| | || ||||||||||| |||||||||||||    
T  34501409 aattttgttagtatcttaaaactgtttaatatatattctgaaaatatttggca 34501461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University