View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_54 (Length: 248)
Name: NF12877_high_54
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 24690715 - 24690946
Alignment:
| Q |
1 |
tacatggtgcatcaccttgaaccaagtgagctcgctacctaagaaaatgtcaaggtcataaaactttggaggggagggatggtcaatgttgagagtgatt |
100 |
Q |
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| T |
24690715 |
tacatggtgcatcaccttgaaccaagtgagctcgctacctaagaaaatgtcaaggtcataaaactttggaggggagggatggtcaatgttgagagtgatt |
24690814 |
T |
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| Q |
101 |
gtataatggatataaaatatcaacttgacattcaaaactaattcaattcagaaattcaataatcctgtttgatttattgtgtgagaataaaaggtcctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24690815 |
gtataatggatataaaatatcaacttgacattcaaaactaattcaattcagaaattcaataatcctgtttgatttattgtgtgagaataaaaggtcctaa |
24690914 |
T |
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| Q |
201 |
ttaaaatatgtgaagctttagaaggagaaaca |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24690915 |
ttaaaatatgtgaagctttagaaggagaaaca |
24690946 |
T |
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