View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_61 (Length: 238)
Name: NF12877_high_61
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41229123 - 41228901
Alignment:
| Q |
1 |
cgtctctaacactatcatgaccaaatccatgatgagtagccgaagcttcccaattaggtacaaaatcaaaagggtcgtgaggaatgaccttaaattctat |
100 |
Q |
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| T |
41229123 |
cgtctctaacactatcatgaccaaatccatgatgattagccgaagcttcccaattaggtacaaaatcaaaagggtcgtgaggaatgaccttaaattctat |
41229024 |
T |
|
| Q |
101 |
agtagatgggttccacaatacaatattaactcagaagcataaaacagaaagagttccatgaacattaccataacttaaaatatcaaaaccaaaatcatac |
200 |
Q |
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| T |
41229023 |
agtagatgggttccacaatacaatattaactcagaagcataaaacagaaagagttccatgaacattaccataacttaaaatatcaaaaccaaaatcatac |
41228924 |
T |
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| Q |
201 |
taacagatacactaaatctaact |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41228923 |
taacagatacactaaatctaact |
41228901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 42777514 - 42777399
Alignment:
| Q |
79 |
gaggaatgaccttaaattctatagtagatgggttccacaatacaatattaac-tcagaagcataaaacag--aaagagttccatgaacattaccataact |
175 |
Q |
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| T |
42777514 |
gaggaatgagcttgaattctttagtagatgggttccacaatataatattttctttatatgcacaaaccagacaaagaattccatgaacactaccagaacc |
42777415 |
T |
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| Q |
176 |
taaaatatcaaaacca |
191 |
Q |
| |
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| T |
42777414 |
taaaatatcaaaacca |
42777399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 16487213 - 16487289
Alignment:
| Q |
51 |
caattaggtacaaaatcaaaagggtcgtgaggaatgaccttaaattctatagtagatgggttccacaatacaatatt |
127 |
Q |
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| T |
16487213 |
caattaggttcagaatctaaagggctgggaggaatgtgcttaaattccatagtagatggattccacaataaaatatt |
16487289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 29418106 - 29418153
Alignment:
| Q |
50 |
ccaattaggtacaaaatcaaaagggtcgtgaggaatgaccttaaattc |
97 |
Q |
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|||||||||| ||||||||||||||| | ||||||||| ||||||||| |
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| T |
29418106 |
ccaattaggtccaaaatcaaaagggttgggaggaatgagcttaaattc |
29418153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 22945009 - 22944965
Alignment:
| Q |
79 |
gaggaatgaccttaaattctatagtagatgggttccacaatacaa |
123 |
Q |
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| T |
22945009 |
gaggaatgaccttgaattccctagtagttgggttccacaatacaa |
22944965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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