View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_high_68 (Length: 230)
Name: NF12877_high_68
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_68 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 24057537 - 24057340
Alignment:
| Q |
14 |
gatgaatgcgacaatcaattcataagatgtgacactgattgcatactccttcatcaagtgagagttactatagcttgcaaaagtgaagttatcaagaagc |
113 |
Q |
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| T |
24057537 |
gatgaatgtgacaatcaattcataagatgtaacactgactgtatactccttcatcaagtgagagttactatagtttacaaaagtgaagttatcaagaagc |
24057438 |
T |
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| Q |
114 |
acataaccatcaatgactaccgttattaaggcaaaggtcatgttgtggttggaatcgggaaaagggtgaaaatggagacggatccaatgtctcccatg |
211 |
Q |
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| T |
24057437 |
acataaccatcaatgattaccgttattaaggcaaaggtcatgttgtggttggaatcgggtaaagggtgaaaatggagacggatccagtgtctcccatg |
24057340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 14672716 - 14672781
Alignment:
| Q |
143 |
ggcaaaggtcatgttgtggttggaatcgggaaaagggtgaaaatggagacggatccaatgtctccc |
208 |
Q |
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| T |
14672716 |
ggcaaaggtcgtgttagggttggaatcaggaagagggtgaaaatagagacggatccaatgtctccc |
14672781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 14678094 - 14678159
Alignment:
| Q |
143 |
ggcaaaggtcatgttgtggttggaatcgggaaaagggtgaaaatggagacggatccaatgtctccc |
208 |
Q |
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| T |
14678094 |
ggcaaaggtcgtgttagggttggaatcaggaagagggtgaaaatagagacggatccaatgtctccc |
14678159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 14666226 - 14666162
Alignment:
| Q |
144 |
gcaaaggtcatgttgtggttggaatcgggaaaagggtgaaaatggagacggatccaatgtctccc |
208 |
Q |
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| T |
14666226 |
gcaatggtcatgttgggggtggaaccgggaaaaagatgaaaatagagacggatccaatgtctccc |
14666162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 30734934 - 30734998
Alignment:
| Q |
144 |
gcaaaggtcatgttgtggttggaatcgggaaaagggtgaaaatggagacggatccaatgtctccc |
208 |
Q |
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| T |
30734934 |
gcaatggtcatgttggggttggaaccgggaaaaagctgaaattagagacggatccaatgtctccc |
30734998 |
T |
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