View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12877_high_72 (Length: 221)
Name: NF12877_high_72
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_high_72 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 1284022 - 1283940
Alignment:
| Q |
125 |
aaaaatgcatggctaagattaaaacataacatcaaaactaacgtgtgcgcctcattcattctcattttcactgtcgttcatctc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
1284022 |
aaaaatgcatggctaagattaaaacataacatcaaaactaacgtgt-cgcctcattcattctcattttcaccggtgttcatctc |
1283940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 1284160 - 1284042
Alignment:
| Q |
23 |
aaatttgcttaagggtataattgtaggagaaaaatcagccctaaataaata--------aatatataaggacatatgctct---cataactattttatat |
111 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | || |||||||||||| |
|
|
| T |
1284160 |
aaatttgtttcagagtataattgtaggagaaaaatcagccctaaataaataaataaataaatatataaggacatatggtatgagaatgactattttatat |
1284061 |
T |
|
| Q |
112 |
gagaattaatgataaaaat |
130 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1284060 |
gagaattaatgataaaaat |
1284042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University