View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_high_73 (Length: 211)

Name: NF12877_high_73
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_high_73
NF12877_high_73
[»] chr6 (2 HSPs)
chr6 (16-191)||(24071397-24071572)
chr6 (16-139)||(24079216-24079339)
[»] chr3 (6 HSPs)
chr3 (16-167)||(28567949-28568100)
chr3 (16-167)||(28574777-28574928)
chr3 (16-177)||(28585976-28586137)
chr3 (16-172)||(26315831-26315989)
chr3 (16-177)||(28579829-28579990)
chr3 (16-129)||(20617141-20617254)
[»] chr2 (1 HSPs)
chr2 (16-133)||(2601425-2601542)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 24071397 - 24071572
Alignment:
Q  16 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24071397 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtgtttcttcaaacattcttttgttacacttc 24071496  T
Q  116 aagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcgcagtaatatatat 191  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  24071497 aagctgtcaaataaatctacacaacaattatagttagtcactacattactaactaaatactcccagtaatatatat 24071572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 24079339 - 24079216
Alignment:
Q  16 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24079339 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc 24079240  T
Q  116 aagctgtcaaataaatctacacaa 139  Q
    ||||||||||||||||||||||||    
T  24079239 aagctgtcaaataaatctacacaa 24079216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 28567949 - 28568100
Alignment:
Q  16 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28567949 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc 28568048  T
Q  116 aagctgtcaaataaatctacacaacaattatagttagtcactatattactaa 167  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  28568049 aagctgtcaaataaatctacacaacaattatagttagtcattttattactaa 28568100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 28574777 - 28574928
Alignment:
Q  16 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc 115  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  28574777 atcttctccgtcaatacttagttgtgatgcttcgtaaagggcaatgaggcctttcaaatcctcaccatgtttttcttcaaacattcttttgttgcacttc 28574876  T
Q  116 aagctgtcaaataaatctacacaacaattatagttagtcactatattactaa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28574877 aagctgtcaaataaatctacacaacaattatagttagtcactatattactaa 28574928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 28585976 - 28586137
Alignment:
Q  16 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc 115  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |||||||||||||  |||||||||||||| ||||||    
T  28585976 atcttctccttcaatacttagttgtgatgcttcgtaaagagcaataagacctttgacatcctcgccatgtttttctttcaacattcttttgttccacttc 28586075  T
Q  116 aagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactc 177  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28586076 aagctgtcaaataaatctacacaacaattatagttggtcactatattactaactaaatactc 28586137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 26315831 - 26315989
Alignment:
Q  16 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  26315831 atcttctccttcaatacttagttgtgatgcttcgtaaagggcaacgagacctttcacatcctcgccatgtttttcttcgaacattcttttgttacacttc 26315930  T
Q  116 aagctgtcaaataaatctacacaaca--attatagttagtcactatattactaactaaa 172  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||    
T  26315931 aagctgtcaaataaatctgcaaaacaatattatagttagtcactatattactaactaaa 26315989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 28579829 - 28579990
Alignment:
Q  16 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc 115  Q
    |||||||||||||||||||||||| |||||||||||||| | ||| |||||||| || || || |||||||||||||  |||||||||||||| ||||||    
T  28579829 atcttctccttcaatacttagttgtgatgcttcgtaaagtgtaattagaccttttacttcttctccatgtttttctttcaacattcttttgttccacttc 28579928  T
Q  116 aagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactc 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28579929 aagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactc 28579990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 20617141 - 20617254
Alignment:
Q  16 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttct-tcaaacattcttttgttacactt 114  Q
    |||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||| |||| || ||||  ||| ||||| |||||||    
T  20617141 atcttctccttcaatacttagttgggatgcttcatacaaggcaatgagacctttcacatcctcaccatattttactctcaatgatt-ttttgctacactt 20617239  T
Q  115 caagctgtcaaataa 129  Q
    ||||| |||||||||    
T  20617240 caagcagtcaaataa 20617254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 2601542 - 2601425
Alignment:
Q  16 atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc 115  Q
    ||||||||| ||||||||||| || || ||||| || |  ||||||||||  |||||||||||||||  ||||||   |||  |||| |||||| || ||    
T  2601542 atcttctccctcaatacttagctgggaggcttcatacatagcaatgagactcttcacatcctcaccaaatttttcactaaaatttctcttgttaaacatc 2601443  T
Q  116 aagctgtcaaataaatct 133  Q
    ||||||||||||| ||||    
T  2601442 aagctgtcaaatatatct 2601425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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