View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_low_12 (Length: 503)

Name: NF12877_low_12
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_low_12
NF12877_low_12
[»] chr1 (12 HSPs)
chr1 (11-358)||(10649825-10650174)
chr1 (394-488)||(10650198-10650292)
chr1 (166-277)||(20817761-20817873)
chr1 (186-321)||(26858719-26858856)
chr1 (238-322)||(15570918-15571002)
chr1 (233-288)||(3660568-3660622)
chr1 (25-119)||(24901342-24901436)
chr1 (183-288)||(26331407-26331510)
chr1 (73-118)||(26858608-26858653)
chr1 (183-358)||(34487687-34487864)
chr1 (233-277)||(36755694-36755738)
chr1 (166-226)||(40817633-40817693)
[»] chr7 (17 HSPs)
chr7 (58-322)||(11693438-11693700)
chr7 (152-358)||(31270593-31270799)
chr7 (141-305)||(13258636-13258796)
chr7 (141-305)||(13265976-13266136)
chr7 (233-322)||(24676990-24677079)
chr7 (26-118)||(7145208-7145300)
chr7 (20-246)||(10676912-10677135)
chr7 (242-322)||(4123423-4123503)
chr7 (243-305)||(12223081-12223144)
chr7 (71-114)||(21572674-21572717)
chr7 (43-115)||(21620695-21620766)
chr7 (167-218)||(1675719-1675770)
chr7 (195-305)||(4514583-4514694)
chr7 (243-309)||(19416735-19416802)
chr7 (43-116)||(17879998-17880072)
chr7 (84-118)||(22182181-22182215)
chr7 (85-126)||(24677181-24677222)
[»] chr6 (4 HSPs)
chr6 (28-304)||(12870426-12870700)
chr6 (39-309)||(8862884-8863154)
chr6 (39-350)||(33545741-33546051)
chr6 (39-290)||(8868522-8868773)
[»] chr4 (13 HSPs)
chr4 (36-274)||(17651675-17651912)
chr4 (186-294)||(24716395-24716503)
chr4 (39-269)||(1186063-1186291)
chr4 (84-272)||(9855949-9856134)
chr4 (192-275)||(9883826-9883909)
chr4 (51-118)||(11442142-11442209)
chr4 (51-118)||(11551486-11551553)
chr4 (166-323)||(35150909-35151067)
chr4 (26-113)||(6115862-6115948)
chr4 (84-118)||(14116488-14116522)
chr4 (166-208)||(39938218-39938260)
chr4 (43-104)||(4046817-4046877)
chr4 (25-116)||(24716236-24716328)
[»] chr8 (13 HSPs)
chr8 (158-304)||(3318590-3318737)
chr8 (166-358)||(33929159-33929351)
chr8 (242-348)||(20704115-20704222)
chr8 (84-276)||(19372314-19372508)
chr8 (220-322)||(25621357-25621459)
chr8 (185-327)||(12842634-12842777)
chr8 (158-276)||(19342693-19342814)
chr8 (28-267)||(25662739-25662976)
chr8 (49-116)||(20049587-20049654)
chr8 (78-116)||(30213998-30214036)
chr8 (243-292)||(24498752-24498801)
chr8 (43-116)||(29290907-29290980)
chr8 (84-116)||(27137914-27137946)
[»] chr5 (9 HSPs)
chr5 (26-277)||(25954867-25955112)
chr5 (31-133)||(20253482-20253585)
chr5 (220-277)||(22641952-22642009)
chr5 (85-211)||(17771842-17771967)
chr5 (209-357)||(17772114-17772262)
chr5 (158-277)||(15991028-15991148)
chr5 (26-118)||(17246021-17246113)
chr5 (25-216)||(19990104-19990294)
chr5 (260-348)||(19761099-19761187)
[»] chr3 (1 HSPs)
chr3 (186-290)||(55212555-55212658)
[»] scaffold0466 (1 HSPs)
scaffold0466 (28-322)||(4989-5281)
[»] scaffold0057 (1 HSPs)
scaffold0057 (243-318)||(67608-67683)
[»] chr2 (10 HSPs)
chr2 (43-114)||(19693362-19693433)
chr2 (166-309)||(30461961-30462105)
chr2 (47-118)||(12845677-12845748)
chr2 (268-357)||(26275625-26275714)
chr2 (47-111)||(12060611-12060674)
chr2 (166-277)||(27918899-27919009)
chr2 (243-294)||(16735558-16735609)
chr2 (85-118)||(30355041-30355074)
chr2 (195-323)||(18114245-18114373)
chr2 (26-94)||(35512455-35512523)
[»] scaffold0008 (1 HSPs)
scaffold0008 (191-305)||(3753-3867)
[»] scaffold0425 (1 HSPs)
scaffold0425 (55-118)||(2555-2618)
[»] scaffold1681 (1 HSPs)
scaffold1681 (26-55)||(1365-1394)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 10649825 - 10650174
Alignment:
Q  11 cagagatgacacgaaattttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttc 110  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10649825 cagagatgacacgaaattttacaagtgtcaaaactctgtcaaattatatagtgcacaaatatttaggaaagtccttacaaactttcaatcttagaatttc 10649924  T
Q  111 ttaagtgtcgaaagtcatttgagcttttaggttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtaga 210  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||    
T  10649925 ttaagtgtcggaagtcatttgagcttttaggttagtttaccactctatgagcatc-aagtgtaaatacaattaaatttatttgtaaactctgattgtaga 10650023  T
Q  211 agtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagt---gcaagag 307  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||   |||||||    
T  10650024 agtcctcaagtgtgagataaggaaattttagacttgtgtgtttaagtaattgtaatcttgtatgattatcgtggaaaatctcttagaagtacagcaagag 10650123  T
Q  308 gattggactaacctcaaattatagggaaaactaggataattgcttgtgttg 358  Q
    ||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  10650124 gattggactaacctcaaattatagggggaattaggataattgcttgtgttg 10650174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 10650198 - 10650292
Alignment:
Q  394 cggctctattttgcttacttgctctattggttcaccaaatggcaaattgtttgagagaacgcgagtttgatatttaaaatagggaaccaataaat 488  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10650198 cggctctattttgcttacttgctctattggttcaccaaatgacaaattgtttgagagaacgcgagtttgatttttaaaatagggaaccaataaat 10650292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 166 - 277
Target Start/End: Original strand, 20817761 - 20817873
Alignment:
Q  166 aaagtgtaaacacaattaaatttatttg-taaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 264  Q
    |||||||||||||||| ||| ||||||| |||||||| |||| ||||||||||   || |||||||  |||| ||||| |||||||| ||||||| ||||    
T  20817761 aaagtgtaaacacaatcaaacttatttgataaactcttattgcagaagtcctcttatgcgagacaataaaatcttagatttgtgtgtctaagtaactgta 20817860  T
Q  265 atcttgtgtgatt 277  Q
    |||||||||||||    
T  20817861 atcttgtgtgatt 20817873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 321
Target Start/End: Original strand, 26858719 - 26858856
Alignment:
Q  186 tttatttg-taaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaag-taattgtaatcttgtgtgattttcgtg 283  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||| || |||   |||||||||||| ||  |||||||| || |||||||| | |||    
T  26858719 tttatttgataaactctgattgtagaagtcctcttgtgtgagtcaagaaagtttcttacttgtgtgtttgagaaaattgtaacctagtgtgattatagtg 26858818  T
Q  284 gaaaatctcttagaagtgcaagaggattggactaacct 321  Q
     ||||||| || |||||||||| ||| || ||||||||    
T  26858819 aaaaatcttttggaagtgcaaggggactgaactaacct 26858856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 15570918 - 15571002
Alignment:
Q  238 ttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctc 322  Q
    ||||||||||||||||||  |||||||||||||||||||| | ||| ||||| || |  || |||||| ||||||||||||||||    
T  15570918 ttagacttgtgtgtttaaacaattgtaatcttgtgtgattctagtgaaaaatttcatgaaaatgcaaggggattggactaacctc 15571002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 3660622 - 3660568
Alignment:
Q  233 aaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaa 288  Q
    |||||||||||||||||||||||||  |||||||||||||||||| | ||||||||    
T  3660622 aaattttagacttgtgtgtttaagt-tttgtaatcttgtgtgattatagtggaaaa 3660568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 24901436 - 24901342
Alignment:
Q  25 aattttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgtc 119  Q
    ||||||| || |||||||||| |||| |||||| ||| ||| ||| | ||| |||| | |||| |||||||||||  ||||||||||||||||||    
T  24901436 aattttaaaactgtcaaaactatgtccaattatttagcgcaaaaacacttaaaaaaattcttataaactttcaattctagaatttcttaagtgtc 24901342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 26331510 - 26331407
Alignment:
Q  183 aaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgt 282  Q
    |||||||||||| ||||||||||||||||||||| | |   |||  ||| |||| || ||||||||||| ||||||| ||||||||||||| ||| | ||    
T  26331510 aaatttatttgtgaactctgattgtagaagtccttaag-aagaggtaag-aaatctttgacttgtgtgtctaagtaactgtaatcttgtgtaattatagt 26331413  T
Q  283 ggaaaa 288  Q
    ||||||    
T  26331412 ggaaaa 26331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 26858608 - 26858653
Alignment:
Q  73 ttagaaaagtccttacaaactttcaatcttagaatttcttaagtgt 118  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||    
T  26858608 ttagaaaaattcttacaaacttttaatcttagaatttcttaagtgt 26858653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 358
Target Start/End: Complemental strand, 34487864 - 34487687
Alignment:
Q  183 aaatttatttgtaaa-ctctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcg 281  Q
    ||||||||||||||| ||||||||||| ||||| ||  |||||||  ||| || | |   |||||||||||  || |||||||||||||||||||| | |    
T  34487864 aaatttatttgtaaaactctgattgtataagtcatcttgtgtgagttaaggaagtctctaacttgtgtgttggagaaattgtaatcttgtgtgattatag 34487765  T
Q  282 tggaaaatctcttagaagtgcaagaggattggactaacctcaaattatagggaaaactaggataa-ttgcttgtgttg 358  Q
    || ||| ||  |  ||||||||||  || ||||||||||||  | ||| ||  |||||||||||| ||||||||||||    
T  34487764 tgaaaattccatgggaagtgcaaggagactggactaacctcggaatatgggataaactaggataatttgcttgtgttg 34487687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 36755694 - 36755738
Alignment:
Q  233 aaattttagacttgtgtgtttaagtaattgtaatcttgtgtgatt 277  Q
    |||| |||||||||||||| || ||||||||||||||||||||||    
T  36755694 aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgatt 36755738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 40817633 - 40817693
Alignment:
Q  166 aaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgag 226  Q
    ||||| |||||||| ||||| |||||  |||||||||| |||||||||||||  |||||||    
T  40817633 aaagtataaacacatttaaacttattgttaaactctgactgtagaagtcctcttgtgtgag 40817693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 58 - 322
Target Start/End: Original strand, 11693438 - 11693700
Alignment:
Q  58 atagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgtcgaaagtcatttgagcttttaggttagattacgactcta 157  Q
    |||||||||||| | |||||||| | |||||||||||| |||| ||| ||||||||||| ||  |||||  ||||||||| || |||||||||  ||||     
T  11693438 atagtgcacaaacacttagaaaaattcttacaaacttttaatcctagtatttcttaagtatcagaagtctattgagctttaag-ttagattacctctctc 11693536  T
Q  158 tgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagt 257  Q
    ||| || |||||||||| |||||| || ||||||||||||||||||||||| ||||||| | |||||||||||| |||| |||||||||||||| |||||    
T  11693537 tgactatcaaagtgtaagcacaatcaactttatttgtaaactctgattgtacaagtccttaagtgtgagacaaggaaatattagacttgtgtgtctaagt 11693636  T
Q  258 aattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctc 322  Q
    |||||||||||||||||||| | || ||||||| |||  ||||||||| ||||||||||||||||    
T  11693637 aattgtaatcttgtgtgattatagtcgaaaatcccttgaaagtgcaag-ggattggactaacctc 11693700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 152 - 358
Target Start/End: Complemental strand, 31270799 - 31270593
Alignment:
Q  152 actctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgt 251  Q
    ||||| ||| || ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||| |||||||    
T  31270799 actctctgattatcaaagtgtaaacaaaatcaaatttatttgtaaactctgattgtagaagtcctcaagtgtgaggcaaggaaatattagacatgtgtgt 31270700  T
Q  252 ttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctcaaattatagggaaaactaggataattgct 351  Q
     ||||||||||||||||||||||||| | || |||||||||||||||||||||| | | | ||||||||||| ||| |||||  ||| | ||||||||||    
T  31270699 ctaagtaattgtaatcttgtgtgattatagtagaaaatctcttagaagtgcaagggaactagactaacctcagattgtagggtgaaccatgataattgct 31270600  T
Q  352 tgtgttg 358  Q
    |||||||    
T  31270599 tgtgttg 31270593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 141 - 305
Target Start/End: Complemental strand, 13258796 - 13258636
Alignment:
Q  141 gttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaatttta 240  Q
    ||||| |||| |||||  ||||| ||||||||||||||||| |||||||||||||||||    |||||||| || ||| ||||||| |||  |||| |||    
T  13258796 gttagtttaccactctccgagtatcaaagtgtaaacacaatcaaatttatttgtaaact----ttgtagaattcttcaagtgtgaggcaatgaaatctta 13258701  T
Q  241 gacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaag 305  Q
     |||||||||| ||| ||||| |||| || || |||| | |||||||||| ||||||||||||||    
T  13258700 aacttgtgtgtctaaataattataattttatgggattatagtggaaaatcccttagaagtgcaag 13258636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 141 - 305
Target Start/End: Complemental strand, 13266136 - 13265976
Alignment:
Q  141 gttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaatttta 240  Q
    ||||| |||| |||||  ||||| ||||||||||||||||| |||||||||||||||||    |||||||| || ||| ||||||| |||  |||| |||    
T  13266136 gttagtttaccactctccgagtatcaaagtgtaaacacaatcaaatttatttgtaaact----ttgtagaattcttcaagtgtgaggcaatgaaatctta 13266041  T
Q  241 gacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaag 305  Q
     |||||||||| ||| ||||| |||| || || |||| | |||||||||| ||||||||||||||    
T  13266040 aacttgtgtgtctaaataattataattttatgggattatagtggaaaatcccttagaagtgcaag 13265976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 322
Target Start/End: Complemental strand, 24677079 - 24676990
Alignment:
Q  233 aaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctc 322  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| |  || ||||||||||||||||| |||  || ||||||| ||||    
T  24677079 aaatcttagacttgtgtgttaaagtaattgtaatcttgtgtgattatactgaaaaatctcttagaagtgtaaggagactggactagcctc 24676990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 7145208 - 7145300
Alignment:
Q  26 attttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgt 118  Q
    ||||||||| || ||| ||||||||||||| | ||||||||||| | |||||||| | |||||| | |||||||||||||||||||| |||||    
T  7145208 attttacaagtggcaatactctgtcaaattctctagtgcacaaacacttagaaaaatgcttacagagtttcaatcttagaatttctttagtgt 7145300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 10677135 - 10676912
Alignment:
Q  20 cacgaaattttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgtc 119  Q
    |||| |||||||||  ||||||||||||||||||||||||||  |||||| | || ||||| | |||||||||||   |||||||||||| | |||| ||    
T  10677135 cacgtaattttacatgtgtcaaaactctgtcaaattatatagcacacaaacactttgaaaaattcttacaaacttcatatcttagaatttttgaagtatc 10677036  T
Q  120 gaaagtcatttgagcttttaggttagattacgactctatgagtaacaaagtgtaaacacaattaaa-tttatttgtaaactctgattgtagaagtcctca 218  Q
     ||| ||| || || ||| | ||||| |||| ||||| ||| | ||| |||||||  ||||| ||| ||||||||||| |||  | |||||||||| ||     
T  10677035 aaaattcaattaag-tttaatgttagcttaccactctctgaat-acatagtgtaa--acaatcaaactttatttgtaatctccaactgtagaagtcatct 10676940  T
Q  219 ggtgtgagacaagtaaattttagacttg 246  Q
     |||| ||||||| |||| |||||||||    
T  10676939 tgtgttagacaaggaaatgttagacttg 10676912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 4123423 - 4123503
Alignment:
Q  242 acttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctc 322  Q
    |||||||||| | || |||||||||||||||||||| | ||| |||||||||  |||||| ||||||| || |||||||||    
T  4123423 acttgtgtgtctgagaaattgtaatcttgtgtgattatagtgaaaaatctctgggaagtgtaagaggactgaactaacctc 4123503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 12223081 - 12223144
Alignment:
Q  243 cttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatct-cttagaagtgcaag 305  Q
    ||||||||||| || |||||||||||||||||||| | ||| ||||||| ||||||||||||||    
T  12223081 cttgtgtgtttgagcaattgtaatcttgtgtgattatagtgaaaaatctccttagaagtgcaag 12223144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 21572674 - 21572717
Alignment:
Q  71 atttagaaaagtccttacaaactttcaatcttagaatttcttaa 114  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  21572674 atttagaaaagttcttacaaactttcaatcttaaaatttcttaa 21572717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 21620695 - 21620766
Alignment:
Q  43 actctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaag 115  Q
    ||||||||||||||||||   |||||||| ||||| || | ||||||| |||||||||||||||||| |||||    
T  21620695 actctgtcaaattatataacacacaaatacttagagaaattcttacaa-ctttcaatcttagaattttttaag 21620766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 1675719 - 1675770
Alignment:
Q  167 aagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctca 218  Q
    |||||||||||| | | |||||||||||||||| ||||||||||||| ||||    
T  1675719 aagtgtaaacaccaatcaatttatttgtaaactttgattgtagaagttctca 1675770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 4514583 - 4514694
Alignment:
Q  195 aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtgg-aaaatctct 293  Q
    ||||||| |||||| ||||||||  ||||||| |||| ||   || ||||||||||||  || ||||| |||||||||||||| | |||| |||||||||    
T  4514583 aaactctaattgtataagtcctcttgtgtgaggcaaggaagactttgacttgtgtgttggagaaattgcaatcttgtgtgattatagtggaaaaatctct 4514682  T
Q  294 tagaagtgcaag 305  Q
    | ||||| ||||    
T  4514683 tggaagttcaag 4514694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 19416802 - 19416735
Alignment:
Q  243 cttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtg-caagagga 309  Q
    |||||||| || || |||||||||||||||||||| | ||| ||||||||||| ||||| ||||||||    
T  19416802 cttgtgtgcttgagcaattgtaatcttgtgtgattatagtgaaaaatctcttataagtgacaagagga 19416735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 17880072 - 17879998
Alignment:
Q  43 actctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttca-atcttagaatttcttaagt 116  Q
    |||||||||||||||||||  |||||| | ||| | || | |||||||||||||| || ||||||||||||||||    
T  17880072 actctgtcaaattatatagcacacaaacacttacataaattcttacaaactttcatatattagaatttcttaagt 17879998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 118
Target Start/End: Original strand, 22182181 - 22182215
Alignment:
Q  84 cttacaaactttcaatcttagaatttcttaagtgt 118  Q
    |||||||||||||||||||||||||||| ||||||    
T  22182181 cttacaaactttcaatcttagaatttctcaagtgt 22182215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 24677222 - 24677181
Alignment:
Q  85 ttacaaactttcaatcttagaatttcttaagtgtcgaaagtc 126  Q
    ||||||| ||||||| |||||||||||||||||||| |||||    
T  24677222 ttacaaaatttcaatattagaatttcttaagtgtcggaagtc 24677181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 28 - 304
Target Start/End: Original strand, 12870426 - 12870700
Alignment:
Q  28 tttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgtcgaaagtca 127  Q
    |||||||||| ||||||||||||||||||||||| ||||||  | || ||||| | |  ||||||||||||||||| |||||||||||||||  ||||||    
T  12870426 tttacaaatgccaaaactctgtcaaattatatagcgcacaagcacttggaaaaattcaaacaaactttcaatcttaaaatttcttaagtgtcagaagtca 12870525  T
Q  128 tttgagcttttaggttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgaga 227  Q
    |||||| ||| |  |||| |||||||||| | ||||  |||||  ||||||||| ||||||||||||||||||||||||||||||||| || ||||||      
T  12870526 tttgagatttaaa-ttagtttacgactctctaagtacaaaagtacaaacacaatcaaatttatttgtaaactctgattgtagaagtccacaagtgtgaag 12870624  T
Q  228 caagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaa 304  Q
    |||  |||  |||||||| ||||||||| ||||||||||||||||||||| | ||  ||||||||||  ||||||||    
T  12870625 caaagaaaccttagactt-tgtgtttaaataattgtaatcttgtgtgattatagtaaaaaatctcttgaaagtgcaa 12870700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 39 - 309
Target Start/End: Original strand, 8862884 - 8863154
Alignment:
Q  39 caaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttca-atcttagaatttcttaagtgtcgaaagtcatttgagcttt 137  Q
    ||||||||| ||||||||||||| ||||||| | | |||||| | |||||||||||||| ||||||||||||||||||||||  || | ||||||||||     
T  8862884 caaaactctatcaaattatatagcgcacaaacactcagaaaaattcttacaaactttcacatcttagaatttcttaagtgtcagaattaatttgagctta 8862983  T
Q  138 taggttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaatt 237  Q
    ||| |||| |||| | ||| ||||||| |||||||||||| |   ||||||||||| |||||||||||||||||||||||  ||||||| |||  ||||     
T  8862984 tag-ttagtttaccattctctgagtaa-aaagtgtaaaca-atcgaaatttatttgcaaactctgattgtagaagtcctcttgtgtgaggcaaaaaaatc 8863080  T
Q  238 ttagacttgtg--tgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagagga 309  Q
    |||||||||||  |||  ||||||||||||| || ||||||| | ||| |||||| |||  || ||||||||||    
T  8863081 ttagacttgtgtatgtcaaagtaattgtaatattatgtgattatggtgaaaaatcccttgaaaatgcaagagga 8863154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 39 - 350
Target Start/End: Complemental strand, 33546051 - 33545741
Alignment:
Q  39 caaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgtcgaaagtcatttgagctttt 138  Q
    ||||||||||  ||||| ||||| ||| ||| | ||| |||| | |||||||||||||||||||| ||||| | | |  | ||| |||  |||||||||     
T  33546051 caaaactctgataaattttatagcgcataaacacttaaaaaaattcttacaaactttcaatcttaaaatttttcatggttagaa-gtctattgagcttta 33545953  T
Q  139 aggttagattacgactctatgagtaacaaagtgtaaaca-caattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaatt 237  Q
    || |||| |||| ||||| | |||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||| | |||||||| | ||||     
T  33545952 ag-ttagtttaccactctctaagtatcaaagtgtaaacatcaatcaaatttatctgtaaactctgattgtagaagtcatcaag-gtgagacatggaaatc 33545855  T
Q  238 ttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctctt-agaagtgcaagaggattggactaacctcaaattatagggaaa 336  Q
    |||||||||||||| |||||||| |||||||||||||||| | ||| |||||||||| | || || |||||| || ||||| |||| | ||  ||||  |    
T  33545854 ttagacttgtgtgtctaagtaatggtaatcttgtgtgattattgtgaaaaatctcttgaaaaatggaagagggtttgactagcctcgacttgcagggtga 33545755  T
Q  337 actaggataattgc 350  Q
    ||||||||||||||    
T  33545754 actaggataattgc 33545741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 39 - 290
Target Start/End: Original strand, 8868522 - 8868773
Alignment:
Q  39 caaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttca-atcttagaatttcttaagtgtcgaaagtcatttgagcttt 137  Q
    ||||||||| |||||||||||||  | |||| | ||| |||||| |||||||||||||| ||||||||  ||||||| ||||  || ||||||||||||     
T  8868522 caaaactctatcaaattatatagcacgcaaacacttaaaaaagttcttacaaactttcacatcttagatattcttaaatgtcagaattcatttgagctta 8868621  T
Q  138 taggttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaatt 237  Q
     || |||| |||| ||||| |||||| ||||||||||||| |   ||||||||||||||||||| ||| | |||||||||  ||||||| |||| ||||     
T  8868622 gag-ttagtttaccactctctgagta-caaagtgtaaaca-atcaaaatttatttgtaaactctaattttggaagtcctcttgtgtgaggcaaggaaatc 8868718  T
Q  238 ttagacttgtgtgttt--aagtaattgtaatcttgtgtgattttcgtggaaaatc 290  Q
    |||||| ||||||| |  |||||||||| || |||||||||| | ||| ||||||    
T  8868719 ttagacatgtgtgtgtcgaagtaattgtcatattgtgtgattatggtgaaaaatc 8868773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 36 - 274
Target Start/End: Original strand, 17651675 - 17651912
Alignment:
Q  36 tgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgtcgaaagtcatttgagct 135  Q
    |||||||||||||||||||||||||||||||||| | ||| |||| | |||| ||| |||||||| ||||||||||||||||||  ||||   |||||||    
T  17651675 tgtcaaaactctgtcaaattatatagtgcacaaaaacttaaaaaaattcttaaaaaatttcaatcctagaatttcttaagtgtcagaagtttattgagct 17651774  T
Q  136 tttaggttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaa 235  Q
    || || |||| |||| ||||| ||| || |||||||||||||  | ||||||||||| |||||||| ||||| || ||||||| ||||||| |||| |||    
T  17651775 ttaag-ttagtttaccactctctgattatcaaagtgtaaacatgactaaatttatttataaactcttattgtggatgtcctcaagtgtgaggcaagaaaa 17651873  T
Q  236 ttttagacttgtgtgtttaagtaattgtaatcttgtgtg 274  Q
    | |||||||||| ||| ||||||||||| ||||||||||    
T  17651874 tcttagacttgtatgtctaagtaattgtcatcttgtgtg 17651912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 186 - 294
Target Start/End: Original strand, 24716395 - 24716503
Alignment:
Q  186 tttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtgga 285  Q
    ||||||||||||||||||||||||||||||||   |||||| |||| ||||||||||||||||||| ||||||||||||||  ||||||||||| ||| |    
T  24716395 tttatttgtaaactctgattgtagaagtcctcttatgtgaggcaaggaaattttagacttgtgtgtctaagtaattgtaatgatgtgtgattttagtgaa 24716494  T
Q  286 aaatctctt 294  Q
    |||||||||    
T  24716495 aaatctctt 24716503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 39 - 269
Target Start/End: Original strand, 1186063 - 1186291
Alignment:
Q  39 caaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgtcgaaagtcatttgagctttt 138  Q
    ||||||||||| |||||   ||| ||||||| |||||  ||| | |||| |||||| || |  ||||||||||||||||||  ||||   |||||||||     
T  1186063 caaaactctgttaaatttcttagcgcacaaacatttaataaaattcttagaaacttccagtactagaatttcttaagtgtcagaagtgtattgagcttta 1186162  T
Q  139 aggttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattt 238  Q
    || || | |||| ||| |||||||| |||||| |||||||||| ||||||||||||| | | | |||||||||||||||| | ||||   ||| |||| |    
T  1186163 ag-ttcgtttaccactttatgagtatcaaagtttaaacacaatcaaatttatttgtatatttttattgtagaagtcctcaag-gtgatctaaggaaatct 1186260  T
Q  239 tagacttgtgtgtttaagtaattgtaatctt 269  Q
    ||||||||||||| |||||||||||||||||    
T  1186261 tagacttgtgtgtctaagtaattgtaatctt 1186291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 84 - 272
Target Start/End: Original strand, 9855949 - 9856134
Alignment:
Q  84 cttacaaactttcaatcttagaatttcttaagtgtcga-aagtcatttgagcttttaggttagattacgactctatgagtaacaaagtgtaaacacaatt 182  Q
    |||||||||| ||| | |||||||||||||||||| || |||||  |||| |||| || |||| |||| ||||| |||||| ||| |||||||||||| |    
T  9855949 cttacaaactgtcagttttagaatttcttaagtgttgagaagtctattgaactttaag-ttagtttaccactctttgagtatcaa-gtgtaaacacaaat 9856046  T
Q  183 aaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtg 272  Q
     | |||||||||||||||||||||||||| |||||| | | |||||| | |||||||| || | || || |||||||||||| |||||||    
T  9856047 cactttatttgtaaactctgattgtagaaatcctcaag-gggagacatg-aaattttaaacctttgcgtctaagtaattgtactcttgtg 9856134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 9883826 - 9883909
Alignment:
Q  192 tgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtga 275  Q
    ||||||||||||||||| || |||||  |||||||||||| || ||||| |||||||||||| || | ||||||||||||||||    
T  9883826 tgtaaactctgattgtataattcctcttgtgtgagacaaggaagttttaaacttgtgtgtttgagcagttgtaatcttgtgtga 9883909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 11442209 - 11442142
Alignment:
Q  51 aaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgt 118  Q
    |||||| |||| ||||||||| |||||||| | |||||||||||| || |||||||||| ||||||||    
T  11442209 aaattaaatagcgcacaaatacttagaaaaattcttacaaactttgaaccttagaattttttaagtgt 11442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 11551486 - 11551553
Alignment:
Q  51 aaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgt 118  Q
    |||||| |||| ||||||||| |||||||| | |||||||||||| || |||||||||| ||||||||    
T  11551486 aaattaaatagcgcacaaatacttagaaaaattcttacaaactttgaaccttagaattttttaagtgt 11551553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 323
Target Start/End: Original strand, 35150909 - 35151067
Alignment:
Q  166 aaagtgtaaacacaattaaa-tttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 264  Q
    |||||||||||||||| ||| |||||   ||||||||| ||||||||  ||||  ||||||  |||| |||| |||||||||  ||| ||| ||||||||    
T  35150909 aaagtgtaaacacaatcaaactttatccataaactctggttgtagaatacctcttgtgtgaagcaagaaaatcttagacttggatgtctaaataattgta 35151008  T
Q  265 atcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctca 323  Q
    ||||||| |||||  |||| ||| ||  ||| ||||||| ||| | |||||||| ||||    
T  35151009 atcttgtctgattaacgtgaaaagtcatttaaaagtgcatgagaactggactaatctca 35151067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 6115948 - 6115862
Alignment:
Q  26 attttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttctta 113  Q
    |||||||||  |||||||||||||||||||  | || ||||||| | |||||||| | ||||| ||||||  ||||||||||||||||    
T  6115948 attttacaagcgtcaaaactctgtcaaattcaaaagcgcacaaacacttagaaaa-ttcttaccaactttagatcttagaatttctta 6115862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 14116522 - 14116488
Alignment:
Q  84 cttacaaactttcaatcttagaatttcttaagtgt 118  Q
    |||||||||||||||||||||||||| ||||||||    
T  14116522 cttacaaactttcaatcttagaattttttaagtgt 14116488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 39938260 - 39938218
Alignment:
Q  166 aaagtgtaaacacaattaaatttatttgtaaactctgattgta 208  Q
    ||||||||||||||   ||||||||||||||||||||||||||    
T  39938260 aaagtgtaaacacatacaaatttatttgtaaactctgattgta 39938218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 4046817 - 4046877
Alignment:
Q  43 actctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttag 104  Q
    ||||||||| ||||||||| ||||||| | |||| ||| || ||||||||||||||||||||    
T  4046817 actctgtcagattatatagcgcacaaacacttagtaaattc-ttacaaactttcaatcttag 4046877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 24716236 - 24716328
Alignment:
Q  25 aattttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttca-atcttagaatttcttaagt 116  Q
    |||||||||| |  |||||| |||| ||||||| ||| ||||||| | ||| | || | |||||||||||||| |||||| ||||||||||||    
T  24716236 aattttacaagttccaaaaccctgtaaaattatgtagcgcacaaacacttaaataaatacttacaaactttcatatcttataatttcttaagt 24716328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 158 - 304
Target Start/End: Complemental strand, 3318737 - 3318590
Alignment:
Q  158 tgagtaacaaagtgtaaacacaattaaa-tttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaag 256  Q
    |||||| ||||||||||||||| | ||| ||||||||||||||||  |||||||||||||||  |||||| ||||||||| ||||| ||||| || ||||    
T  3318737 tgagtatcaaagtgtaaacacattcaaactttatttgtaaactcttgttgtagaagtcctcaaatgtgaggcaagtaaatcttagagttgtgcgtctaag 3318638  T
Q  257 taattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaa 304  Q
    ||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  3318637 taattgtaatcttgtgtgattattgtggaaaatcccttggaagtgcaa 3318590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 166 - 358
Target Start/End: Original strand, 33929159 - 33929351
Alignment:
Q  166 aaagtgtaaacacaattaaatttatttgt-aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 264  Q
    |||||||||||| |||   |||||||||| ||||| |||| ||| ||||||||  |||||||  || |||| | |  ||||| |||||| |  |||| ||    
T  33929159 aaagtgtaaacagaatctcatttatttgttaaactttgatggtataagtcctcttgtgtgaggtaa-taaagtctcaacttgcgtgtttgataaattata 33929257  T
Q  265 atcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctcaaattatagggaaaactaggataattgcttgtgttg 358  Q
    ||||||||||||| | ||| ||||||  || |||||||||||||| ||||||||||||  ||||| | |  |||||||||||||||||||||||    
T  33929258 atcttgtgtgattatagtgaaaaatcatttggaagtgcaagaggactggactaacctcggattattgagtgaactaggataattgcttgtgttg 33929351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 242 - 348
Target Start/End: Complemental strand, 20704222 - 20704115
Alignment:
Q  242 acttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttag-aagtgcaagaggattggactaacctcaaattatagggaaaacta 340  Q
    |||||||||||| || | |||||||||||||||||| | ||||||||||| |||| ||||||||| ||| |||||||||||| |||| | |||  ||| |    
T  20704222 acttgtgtgtttgagcagttgtaatcttgtgtgattgtagtggaaaatctattagaaagtgcaaggggactggactaacctcgaattgtggggtgaacaa 20704123  T
Q  341 ggataatt 348  Q
    ||||||||    
T  20704122 ggataatt 20704115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 276
Target Start/End: Original strand, 19372314 - 19372508
Alignment:
Q  84 cttacaaactttcaatcttagaatttcttaagtgtcgaaagtcatttgagcttttaggttagattacgactctatgagtaacaaagtgtaaacacaatta 183  Q
    ||||||| ||| |||||||  |||||||||||| || ||||||  ||||| ||||| ||||| |||| ||| |  ||||| ||||||||||||||||| |    
T  19372314 cttacaatcttgcaatcttgtaatttcttaagtatcaaaagtctattgag-ttttaagttagtttaccacttt--gagtatcaaagtgtaaacacaataa 19372410  T
Q  184 aatttatttgt-----aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgat 276  Q
      ||| ||| |     ||||| |||| ||||||||||||| ||||||| |||||   |||||||| ||||| | ||||||||||||| ||||||||||    
T  19372411 ttttttttttttgtctaaactttgatcgtagaagtcctcaagtgtgaggcaagttttttttagacatgtgtatgtaagtaattgtaaccttgtgtgat 19372508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 25621459 - 25621357
Alignment:
Q  220 gtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaac 319  Q
    ||||||| |||| ||||||||| |||||||||||| |||||| ||||| | ||||||| | |||||||||| |||| |||| ||||  |  |||||||||    
T  25621459 gtgtgaggcaaggaaattttaggcttgtgtgtttatgtaattataatcctttgtgattatagtggaaaatcccttaaaagtacaaggtgtctggactaac 25621360  T
Q  320 ctc 322  Q
    |||    
T  25621359 ctc 25621357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 327
Target Start/End: Complemental strand, 12842777 - 12842634
Alignment:
Q  185 atttatttg-taaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtg 283  Q
    ||||||||| |||||||| |||||| || |||||  ||||||| |||  || | | | |||||||||||| |  |||||||||||||||||||| | ||     
T  12842777 atttatttgataaactctaattgtataattcctcttgtgtgaggcaaagaagtctcaaacttgtgtgtttgatcaattgtaatcttgtgtgattatagta 12842678  T
Q  284 gaaaatctcttagaagtgcaagaggattggactaacctcaaatt 327  Q
     ||||| | || |||||| ||| ||| |||||||||||||||||    
T  12842677 aaaaatattttggaagtgtaaggggactggactaacctcaaatt 12842634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 19342693 - 19342814
Alignment:
Q  158 tgagtaacaaagtgtaaacacaattaaatttatttgt---aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgttta 254  Q
    |||||| ||||||||||||||||| |  ||| ||| |   ||||| |||| ||||||||||||| |||||||  ||||   |||||||| ||||| | ||    
T  19342693 tgagtatcaaagtgtaaacacaataattttttttttttttaaactttgatcgtagaagtcctcaagtgtgaggaaagttttttttagacatgtgtatgta 19342792  T
Q  255 agtaattgtaatcttgtgtgat 276  Q
    ||||||||||| ||||||||||    
T  19342793 agtaattgtaaccttgtgtgat 19342814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 25662976 - 25662739
Alignment:
Q  28 tttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgtcgaaa--gt 125  Q
    ||||||| || ||||||||||||||| || | |||||||||| | |||||||| || ||| ||||| |  ||||| ||||||||||||| |  |||  ||    
T  25662976 tttacaagtgccaaaactctgtcaaaatacaaagtgcacaaagacttagaaaattc-ttagaaactctgtatcttggaatttcttaagtataaaaaaagt 25662878  T
Q  126 catttgagcttttaggttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtga 225  Q
    || ||||||||| || ||||  |||   ||| |||||| ||||  |||||||  || || ||||||| |||  | ||||| ||||| ||| || ||||||    
T  25662877 caattgagctttaagtttagtataccgttctttgagta-caaaaagtaaaca--atcaattttatttttaatatttgattttagaattccacatgtgtga 25662781  T
Q  226 gacaagtaaattttagacttgtgtgtttaagtaattgtaatc 267  Q
    | |||| ||||||||| ||||||||| || ||||||||||||    
T  25662780 ggcaaggaaattttaggcttgtgtgtctacgtaattgtaatc 25662739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 20049587 - 20049654
Alignment:
Q  49 tcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagt 116  Q
    |||| |||||||| ||||||| | ||||| || | ||||||| ||||||||| |||||||||||||||    
T  20049587 tcaagttatatagcgcacaaacacttagagaaattcttacaagctttcaatcatagaatttcttaagt 20049654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 30214036 - 30213998
Alignment:
Q  78 aaagtccttacaaactttcaatcttagaatttcttaagt 116  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  30214036 aaagttcttacaaactttcaatcttaaaatttcttaagt 30213998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 24498752 - 24498801
Alignment:
Q  243 cttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctc 292  Q
    |||||||| || || |||||||||||||||||||| | ||||||||||||    
T  24498752 cttgtgtgcttgagcaattgtaatcttgtgtgattatagtggaaaatctc 24498801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 29290907 - 29290980
Alignment:
Q  43 actctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagt 116  Q
    |||||||||||||| |||| ||||||| | |||   || | ||||||||||||||||||||  |||||||||||    
T  29290907 actctgtcaaattacatagcgcacaaacacttactgaaattcttacaaactttcaatcttaacatttcttaagt 29290980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 27137946 - 27137914
Alignment:
Q  84 cttacaaactttcaatcttagaatttcttaagt 116  Q
    ||||||| |||||||||||||||||||||||||    
T  27137946 cttacaagctttcaatcttagaatttcttaagt 27137914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 26 - 277
Target Start/End: Original strand, 25954867 - 25955112
Alignment:
Q  26 attttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgtcgaaagt 125  Q
    ||||||||| ||||||||||||||||||||  | |||||||||| | |||||||| || |||||||||||  |||||||||||||||| ||||   ||||    
T  25954867 attttacaagtgtcaaaactctgtcaaatttaaaagtgcacaaacacttagaaaattc-ttacaaactttatatcttagaatttctta-gtgttagaagt 25954964  T
Q  126 catttgagcttttaggttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtga 225  Q
     | ||||  ||  || |||| |||  ||||| ||||||  ||||| |||||||| | ||||||   ||||||||||||||||||||||||||  |||| |    
T  25954965 tacttgaaattaaag-ttagtttatcactctttgagtacaaaagtttaaacacattcaaattt---tgtaaactctgattgtagaagtcctcttgtgtaa 25955060  T
Q  226 gacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgatt 277  Q
    | |||  |||| |||||||||||||| ||| |||||||||||||||| ||||    
T  25955061 ggcaatgaaatcttagacttgtgtgtctaaataattgtaatcttgtgcgatt 25955112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 20253482 - 20253585
Alignment:
Q  31 acaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttca-atcttagaatttcttaagtgtcgaaagtcatt 129  Q
    |||| ||| ||||| |||||||||||||||| ||| ||| | |||||||| |  ||| ||||||||| |||||||||||||||||||||| |||||||||    
T  20253482 acaagtgtaaaaacactgtcaaattatatagcgcataaacacttagaaaaattattataaactttcatatcttagaatttcttaagtgtcaaaagtcatt 20253581  T
Q  130 tgag 133  Q
    ||||    
T  20253582 tgag 20253585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 22642009 - 22641952
Alignment:
Q  220 gtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgatt 277  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  22642009 gtgtgaggcaaggaaatcttagacttgtgtgtttaagtaattgtaatcttgtgtgatt 22641952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 17771842 - 17771967
Alignment:
Q  85 ttacaaactttcaatcttagaatttcttaagtgtcgaaagtcatttgagcttttaggttagattacgactctatgagtaacaaagtgtaaacacaattaa 184  Q
    ||||||||||| ||||||| |||||||||||||| |   ||   ||||| ||||| | ||| |||| ||||| |||||  |||||| |||||||||| ||    
T  17771842 ttacaaacttttaatcttaaaatttcttaagtgttgggggtttcttgag-ttttaagatagtttaccactctttgagtgtcaaagtctaaacacaatcaa 17771940  T
Q  185 atttatttgtaaactctgattgtagaa 211  Q
    | |||||||||||||||||||||||||    
T  17771941 acttatttgtaaactctgattgtagaa 17771967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 357
Target Start/End: Original strand, 17772114 - 17772262
Alignment:
Q  209 gaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagagg 308  Q
    |||||||||  ||||||| |||  |||| ||| | |||||||| |||||||||||||| || | ||||| | ||||||||| | ||  |||||||||  |    
T  17772114 gaagtcctcttgtgtgaggcaaagaaatcttatatttgtgtgtctaagtaattgtaatattttatgattatagtggaaaattttttgaaagtgcaaggag 17772213  T
Q  309 attggactaacctcaaattatagggaaaactaggataattgcttgtgtt 357  Q
    ||||||| ||| || |||| ||||   ||||||||||||||||||||||    
T  17772214 attggaccaacatcgaattgtaggatgaactaggataattgcttgtgtt 17772262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 277
Target Start/End: Original strand, 15991028 - 15991148
Alignment:
Q  158 tgagtaacaaagtgtaaacac-aattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagactt-gtgtgtttaa 255  Q
    |||||| |||||||||||||| ||| ||||||||||||||| ||| |||| |||||| |||| | ||||| |||  |||| ||| |||| | |||| |||    
T  15991028 tgagtatcaaagtgtaaacaccaatcaaatttatttgtaaattctaattgaagaagttctcaag-gtgaggcaatgaaatcttaaactttgcgtgtctaa 15991126  T
Q  256 gtaattgtaatcttgtgtgatt 277  Q
    |||||||||||||||| |||||    
T  15991127 gtaattgtaatcttgtatgatt 15991148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 17246113 - 17246021
Alignment:
Q  26 attttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgt 118  Q
    ||||||||| ||||   ||| ||||||| ||||||  ||||||| | |||||||| | |||| |||||||||||| |||||||||||||||||    
T  17246113 attttacaagtgtccttactatgtcaaaatatatatcgcacaaacacttagaaaaattcttataaactttcaatcatagaatttcttaagtgt 17246021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 19990294 - 19990104
Alignment:
Q  25 aattttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttca-atcttagaatttcttaagtgtcgaaa 123  Q
    |||||||||| |||  ||||| |||||||||| | |  || |||| | |||||||| | |||||||| ||||| |||||| |||||||||||||||| |     
T  19990294 aattttacaagtgttgaaactttgtcaaattacacatcgcgcaaacacttagaaaaattcttacaaattttcatatcttaaaatttcttaagtgtcggat 19990195  T
Q  124 gtcatttgagcttttaggttagattacgactctatgagtaacaaagtgtaaacacaattaaa-tttatttgtaaact-ctgattgtagaagtcct 216  Q
     |||| ||||||| || ||||| |||| ||||| ||||  |||||||||||  ||||| ||| ||| ||| |||||| |||||||||||||||||    
T  19990194 atcatatgagcttata-gttagtttaccactctttgag-gacaaagtgtaa--acaatcaaactttctttctaaactcctgattgtagaagtcct 19990104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 348
Target Start/End: Complemental strand, 19761187 - 19761099
Alignment:
Q  260 ttgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctcaaattatagggaaaactaggataatt 348  Q
    |||||||||| ||||||| | ||| |||||| |||  ||||||||| ||| ||||||||||||||||| |  || |||| |||||||||    
T  19761187 ttgtaatcttatgtgattatagtgaaaaatcacttgaaagtgcaaggggaatggactaacctcaaattgtgagggaaaccaggataatt 19761099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 55212658 - 55212555
Alignment:
Q  186 tttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtgga 285  Q
    |||||||||||||||||||||| ||||||  |  |||||||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||| | |||||    
T  55212658 tttatttgtaaactctgattgttgaagtcaccttgtgtgagacaagaaaatcttaaacttgtgtg-ttaagtaattgtaatctcgtgtgattatagtgga 55212560  T
Q  286 aaatc 290  Q
    |||||    
T  55212559 aaatc 55212555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 322
Target Start/End: Original strand, 4989 - 5281
Alignment:
Q  28 tttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgtcgaaa--gt 125  Q
    ||||||| |||||||||||||||||| |||| ||||| |||| | |||||||| || ||| ||||| |  ||||| ||||||| ||||| |  |||  ||    
T  4989 tttacaagtgtcaaaactctgtcaaaatataaagtgcgcaaagacttagaaaattc-ttagaaactctatatcttggaatttcctaagtataaaaaaagt 5087  T
Q  126 catttgagcttttaggttagattacgactctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtga 225  Q
    || ||||||||| || |||| ||||   ||| |||||| |||| ||||||||  || || ||||||| |||  | | ||| |||||  || || || |||    
T  5088 caattgagctttaagtttagtttaccgttctttgagta-caaaatgtaaaca--atcaattttatttttaatattttattttagaatcccacatgtatga 5184  T
Q  226 gacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctc 322  Q
    | |||| ||||||||| ||||||||| || |||||||||||| | ||||||| | ||| |||||| |||| ||||| |||  || ||||||||||||    
T  5185 ggcaaggaaattttaggcttgtgtgtctacgtaattgtaatcctttgtgattatagtgaaaaatcccttaaaagtgtaaggtgactggactaacctc 5281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 67683 - 67608
Alignment:
Q  243 cttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaa 318  Q
    ||||||||| ||||||||||||||||||| || || | ||| |||||||||||||| |||||||||| | ||||||    
T  67683 cttgtgtgtctaagtaattgtaatcttgtatggttatagtgaaaaatctcttagaaatgcaagaggactagactaa 67608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 19693362 - 19693433
Alignment:
Q  43 actctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaa 114  Q
    ||||| ||||||||||||| ||||||||| ||||| || |   |||||||||||||||||||||||||||||    
T  19693362 actctatcaaattatatagagcacaaatacttagagaaatttgtacaaactttcaatcttagaatttcttaa 19693433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 30462105 - 30461961
Alignment:
Q  166 aaagtgtaaacacaattaaatttatttg-taaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 264  Q
    ||||||||||||||   ||||||||||| |||||| ||||| || ||||||||  |||||||||||| || | |||   ||||||| || || |||||||    
T  30462105 aaagtgtaaacacacacaaatttatttgataaactatgattttataagtcctcttgtgtgagacaaggaagtcttaattttgtgtgcttgagcaattgta 30462006  T
Q  265 atcttgtgtgattttcgtggaaaatctcttagaagtgcaagagga 309  Q
    ||||||||| ||| | ||| ||||||  ||  |||||||||||||    
T  30462005 atcttgtgtaattatagtgaaaaatccattgaaagtgcaagagga 30461961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 12845677 - 12845748
Alignment:
Q  47 tgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgt 118  Q
    ||||||||| | ||||||| ||| | |||||||| | |||||||  ||||||||||||||||||||||||||    
T  12845677 tgtcaaattctctagtgcaaaaacacttagaaaaattcttacaagttttcaatcttagaatttcttaagtgt 12845748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 26275625 - 26275714
Alignment:
Q  268 ttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctcaaattatagggaaaactaggataattgcttgtgtt 357  Q
    |||||||||| | ||| |||||||||||||||||||||  || |||||||||||| |||| | |||  ||| | |||||||| |||||||    
T  26275625 ttgtgtgattatagtgaaaaatctcttagaagtgcaagtagactggactaacctcgaattgtggggtgaaccaagataattgtttgtgtt 26275714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 12060674 - 12060611
Alignment:
Q  47 tgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttct 111  Q
    ||||||||||||||||||||||| ||||||| || | |||||||||| |  ||||||||||||||    
T  12060674 tgtcaaattatatagtgcacaaacatttagagaaattcttacaaactct-tatcttagaatttct 12060611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 277
Target Start/End: Original strand, 27918899 - 27919009
Alignment:
Q  166 aaagtgtaaacacaattaaatttatttgt-aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 264  Q
    |||||||||||||| |||||||||| ||| |||||||||||||| ||||||||  || |||| |||| || | |  ||||||||| ||  || |||||||    
T  27918899 aaagtgtaaacaca-ttaaatttatctgttaaactctgattgtataagtcctcttgtatgag-caaggaagtctctgacttgtgtattggagcaattgta 27918996  T
Q  265 atcttgtgtgatt 277  Q
    |||||||||||||    
T  27918997 atcttgtgtgatt 27919009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 16735558 - 16735609
Alignment:
Q  243 cttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctctt 294  Q
    |||||||| ||||| |||||||||||||||||||| | ||| ||||||||||    
T  16735558 cttgtgtgcttaagcaattgtaatcttgtgtgattatagtgaaaaatctctt 16735609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 30355041 - 30355074
Alignment:
Q  85 ttacaaactttcaatcttagaatttcttaagtgt 118  Q
    |||| |||||||||||||||||||||||||||||    
T  30355041 ttacgaactttcaatcttagaatttcttaagtgt 30355074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 18114373 - 18114245
Alignment:
Q  195 aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctctt 294  Q
    |||||| ||||||| |||| |||  || |||| |||| || ||| | |||||||||||  || | ||||||| |||||||||| | ||| ||||| ||||    
T  18114373 aaactcggattgtataagtactcttgtttgaggcaaggaagtttcaaacttgtgtgttggagcacttgtaattttgtgtgattatagtgaaaaatatctt 18114274  T
Q  295 agaagtgcaagaggattggactaacctca 323  Q
     |||||  ||| ||| |||||||||||||    
T  18114273 ggaagtataaggggactggactaacctca 18114245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 35512455 - 35512523
Alignment:
Q  26 attttacaaatgtcaaaactctgtcaaattatatagtgcacaaatatttagaaaagtccttacaaactt 94  Q
    ||||||||| |||||||||||| |||||||  | |||||||||| | ||| |||| | |||||||||||    
T  35512455 attttacaagtgtcaaaactctatcaaattcaagagtgcacaaacaattaaaaaaattcttacaaactt 35512523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 305
Target Start/End: Complemental strand, 3867 - 3753
Alignment:
Q  191 ttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatc 290  Q
    ||||||||||| |||||| |||  |||  ||||||| |||| |||| | | |||| |||||||||| | |||||||||||||||||| |  || ||||||    
T  3867 ttgtaaactcttattgtataaggtctcttgtgtgaggcaaggaaatctcaaacttatgtgtttaagaagttgtaatcttgtgtgattgtattgaaaaatc 3768  T
Q  291 tcttagaagtgcaag 305  Q
     || |||||||||||    
T  3767 cctcagaagtgcaag 3753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 2618 - 2555
Alignment:
Q  55 tatatagtgcacaaatatttagaaaagtccttacaaactttcaatcttagaatttcttaagtgt 118  Q
    ||||||| ||||||| | ||||| || | |||||||||||||||||||||||| ||| ||||||    
T  2618 tatatagcgcacaaacacttagagaaattcttacaaactttcaatcttagaatatctcaagtgt 2555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1681 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1681
Description:

Target: scaffold1681; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 1365 - 1394
Alignment:
Q  26 attttacaaatgtcaaaactctgtcaaatt 55  Q
    ||||||||||||||||||||||||||||||    
T  1365 attttacaaatgtcaaaactctgtcaaatt 1394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University