View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12877_low_13 (Length: 468)
Name: NF12877_low_13
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Original strand, 2391153 - 2391590
Alignment:
| Q |
11 |
cagagacacatactgacaatgtttttgactgacaatgttaatttgatttcagcagaggatcaaacatacatgtgtggatcgtacatatacctcaaatgat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2391153 |
cagaaacacatactgacaatgtttttgactgacaatgttaatttgatttcagcagaggatcaaacatacatgtgtggatc----atatacctcaaatgat |
2391248 |
T |
|
| Q |
111 |
aagatcttgtggaaacgttaagtccctttcttctattgtaggcctaacggctaacagtatttgcaggacctgtttattatcaacttagcgtgttgttgca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2391249 |
aagatcttgtggaaacgttaagtccctttcttctattgtaggcctaacggctagcagtatttgcaggacctgtttattatcaacttagcgtgttgttgca |
2391348 |
T |
|
| Q |
211 |
acaattcaaacaacttgcaaaataaagccagagtcggcagcaagatacatgatcttgtttatgataaaagtatccggttataataatttatgatctagca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2391349 |
acaattcaaacaacttgcaaaataaagccagagtcggcagcaagatacatgatcttgtttatgataaaagtatccggttataataatttatgatctagca |
2391448 |
T |
|
| Q |
311 |
tacactagcaagtttttgggttgaaaaatgatattttgatgacatcaagttaaactacaaattggaaggtgggtaactcaactaatttgaataaatggat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2391449 |
tacactagcaagtttttgggttgaaaaatgatattttgatgacatcaaattaaactacaaattggaaggtgggtaactcaactaatttgaataaatggat |
2391548 |
T |
|
| Q |
411 |
tgaagaagttaaagagtt-aaatgtttaggccattacttttt |
451 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
2391549 |
tgaagaagtgaaagagttaaaaggtttaggccattacttttt |
2391590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University