View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12877_low_14 (Length: 466)
Name: NF12877_low_14
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Complemental strand, 41172196 - 41171765
Alignment:
| Q |
7 |
gcagcacagatacctagttttcttgatttaggctatattaggttctttaaattcatactgtcgctagatttcaagtgtaatcagattaatttctatttga |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41172196 |
gcagcccagatacctagttttcttgatttaggctatattaggttctttaaattcatactgtcgctagatttcaagtgtaatcagattaatttctatttga |
41172097 |
T |
|
| Q |
107 |
gttctgtatctgagatgattttaatttctgtttcagctaattatatttaattttgttgtttcttttcattaacgtctagggagtgacctatatatacttg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41172096 |
gttctgtatctgagatgattttaatttctgtttcagctaattatatttaattttgttgtttcttttcattaacgtctagggagtgacctatatatacttg |
41171997 |
T |
|
| Q |
207 |
aagcatataatctggtgaggcctacataccataccctttgatgaatctaggttagagaaataagttgatgctttggagcttaggctccaaaagcccattc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41171996 |
aagcatataatctggtgaggcctacataccataccctttgatgaatctaggtt--agaaataagttgatgctttggggcttaggctccaaaagcccattc |
41171899 |
T |
|
| Q |
307 |
tatttaataaattaatggagtaattagtaataataagatcaacgtggtttggcctccnnnnnnntgaacttggtttatgaagctggtatgtataagcggt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41171898 |
tatttaataaattaatggagtaattagtaataataagatcaacgtggtttggcctccaaaaaaatgaacttggtttatgaagctggtatgtataagcggt |
41171799 |
T |
|
| Q |
407 |
atggatgcaatacgcataagtaaaattagtctatacctaataagt |
451 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
41171798 |
atgg-----------ataagtaaaattagtctatacctaataagt |
41171765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University