View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_16 (Length: 449)
Name: NF12877_low_16
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 36991331 - 36991038
Alignment:
| Q |
17 |
catcacagaaaaagcaacaattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttatgtgggtgtac |
116 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36991331 |
catcacagcaaaagcgacaattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttacgtgggtgtac |
36991232 |
T |
|
| Q |
117 |
caaagtatacctccagccattagatcaagtagagatctaaagttggtgttgtaatagttattgacccactccttactttcgcataagtctatacatcaac |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36991231 |
caaagtatactaccagccattagatcaagtagagatctaaagttggtgctgtaatagttattgacccactccttactttcgcataagtctatacatcaac |
36991132 |
T |
|
| Q |
217 |
actcgtattattttactaatcacttcataaacattattttccatt----nnnnnnnnncttattcacaaaagaactatatcagaattaattata |
306 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36991131 |
acttgtattattttactaatcacttcataaacattattttccattttaaaaaaaaaaacttattcacaaaagaactatatcagaattaattata |
36991038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 37016771 - 37016478
Alignment:
| Q |
17 |
catcacagaaaaagcaacaattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttatgtgggtgtac |
116 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37016771 |
catcacagcaaaagcgacaattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttacgtgggtgtac |
37016672 |
T |
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| Q |
117 |
caaagtatacctccagccattagatcaagtagagatctaaagttggtgttgtaatagttattgacccactccttactttcgcataagtctatacatcaac |
216 |
Q |
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| T |
37016671 |
caaagtatactaccagccattagatcaagtagagatctaaagttggtgctgtaatagttattgacccactccttactttcgcataagtctatacatcaac |
37016572 |
T |
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| Q |
217 |
actcgtattattttactaatcacttcataaacattattttccatt----nnnnnnnnncttattcacaaaagaactatatcagaattaattata |
306 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37016571 |
acttgtattattttactaatcacttcataaacattattttccattttaaaaaaaaaaacttattcacaaaagaactatatcagaattaattata |
37016478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 298 - 423
Target Start/End: Complemental strand, 36989829 - 36989703
Alignment:
| Q |
298 |
ttaattataataatattaattacatgtttgaagtatgcggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgcagaaaattga |
397 |
Q |
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| T |
36989829 |
ttaattataataatattaattacatgtttgaagtatgcggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgcagaaaattga |
36989730 |
T |
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| Q |
398 |
accaaaaag-ttattttatcaaatgaa |
423 |
Q |
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|| |||||| || |||||||||||||| |
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| T |
36989729 |
actaaaaagttttttttatcaaatgaa |
36989703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 298 - 423
Target Start/End: Complemental strand, 37015269 - 37015143
Alignment:
| Q |
298 |
ttaattataataatattaattacatgtttgaagtatgcggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgcagaaaattga |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37015269 |
ttaattataataatattaattacatgtttgaagtatgcggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgcagaaaattga |
37015170 |
T |
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| Q |
398 |
accaaaaag-ttattttatcaaatgaa |
423 |
Q |
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|| |||||| || |||||||||||||| |
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| T |
37015169 |
actaaaaagttttttttatcaaatgaa |
37015143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 32 - 233
Target Start/End: Original strand, 28296212 - 28296414
Alignment:
| Q |
32 |
aacaattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttatgtgggtgtaccaaagtatacctcca |
131 |
Q |
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|||||||| |||||| |||||||||||||| ||| | |||||||| || |||||||| ||||||||||||| |||||| ||||||||||||||||| ||| |
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| T |
28296212 |
aacaattatgcctactggctgcaccctcagctttccgatgggatactgatagatatttatgttcttcattgctatgtgagtgtaccaaagtataccacca |
28296311 |
T |
|
| Q |
132 |
gccattagatcaagtagag-atctaaagttggtgttgtaatagttattgacccactccttactttcgcataagtctatacatcaacactcgtattatttt |
230 |
Q |
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|||||||||||||| |||| ||| ||||||| || || ||||| ||| || ||||||||||| ||||||| ||||| |||||||||| ||||||||| |
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| T |
28296312 |
gccattagatcaagcagagaatccaaagttgatgctgcaatagctatagatccactccttaccgtcgcatatgtctacacatcaacacgtatattatttt |
28296411 |
T |
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| Q |
231 |
act |
233 |
Q |
| |
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||| |
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| T |
28296412 |
act |
28296414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 308 - 423
Target Start/End: Original strand, 757558 - 757673
Alignment:
| Q |
308 |
taatattaattacatgtttgaagtatgcggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgcagaaaattgaaccaaaaagt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
757558 |
taatattaattacatgtttgaagtatgcggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgcagaaaattgaactaaaaagt |
757657 |
T |
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| Q |
408 |
tattttatcaaatgaa |
423 |
Q |
| |
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| |||||||||||||| |
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| T |
757658 |
ttttttatcaaatgaa |
757673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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