View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_low_19 (Length: 431)

Name: NF12877_low_19
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_low_19
NF12877_low_19
[»] chr7 (4 HSPs)
chr7 (15-422)||(327599-328013)
chr7 (15-417)||(620588-620997)
chr7 (35-167)||(528434-528566)
chr7 (325-370)||(36498260-36498305)
[»] chr6 (2 HSPs)
chr6 (338-379)||(33920703-33920744)
chr6 (328-384)||(14558466-14558521)
[»] chr5 (1 HSPs)
chr5 (344-384)||(27969877-27969918)


Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 327599 - 328013
Alignment:
Q  15 caaatgtccttgacctatagagtgcctcatcaagagacagggcttggcgcgcatcggtgcgagccacaatcacaatatcagatccactctcatttctggc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327599 caaatgtccttgacctatagagtgcctcatcaagagacagggcttggcgcgcatcggtgcgagccacaatcacaatatcagatccactctcatttctggc 327698  T
Q  115 atcaaccgcatctttgattcacatgactgcctcttctctcgataccactttcctcccctgtgtgtg-------gcttttggagattcctagcaatgaaac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  327699 atcaaccgcatctttgattcacatgactgcctcttctctcgataccactttcctcccctgtgtgtgaccacacgcttttggagattcctagcaatgaaac 327798  T
Q  208 ggcaaaatgaagtaatttacagaaagttggatagaaatatcaacatgtcaagttataataaggtgctggaatatgaaataataagcttgcgaatgaatca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327799 ggcaaaatgaagtaatttacagaaagttggatagaaatatcaacatgtcaagttataataaggtgctggaatatgaaataataagcttgcgaatgaatca 327898  T
Q  308 gtaaatactcaagttgcccctgaaactgttgaaccgtatcaacctagtcctccacattgtcaatatttcaaaatgatatctagagttgccaaataaaata 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  327899 gtaaatactcaagttgcccctgaaactgttgaaccgtatcaacctagtcctccacattgtcaatatttcaaaatgatatctggagttgccaaataaaata 327998  T
Q  408 aaccatcgttcttct 422  Q
    |||||||||||||||    
T  327999 aaccatcgttcttct 328013  T

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Target: chr7; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 417
Target Start/End: Complemental strand, 620997 - 620588
Alignment:
Q  15 caaatgtccttgacctatagagtgcctcatcaagagacagggcttggcgcgcatcggtgcgagccacaatcacaatatcagatccactctcatttctggc 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  620997 caaatgcccttgacctatagagtgcctcatcaagagacagggcttggcgcgcatcggtgcgagccacaatcacaatatcagatccactctcatttctggc 620898  T
Q  115 atcaaccgcatctttgattcacatgactgcctcttctctcgataccactttcctcccctgtgtgtg-------gcttttggagattcctagcaatgaaac 207  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||||||||||    
T  620897 atcaaccgcagctttgattcgcatgactgcctcttctctcgataccactttcctcccctgtgtgtgaccacacgcttttggagatacctagcaatgaaac 620798  T
Q  208 ggcaaaatgaagtaatttacagaaagttggatagaaatatcaacatgtcaagttataataaggtgctggaatatgaaataataagcttgcgaatgaatca 307  Q
     ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  620797 agcaaaatgaagtaatttacagaaagttggatagaaacgtcaacatgtcaagttataataaggtgctggaatatgaaataataagcttgcgaatgaatga 620698  T
Q  308 gtaaatactcaagttgcccctgaaactgttgaaccgtatcaacctagtcctccacattgtcaatatttcaaaatgatatctagagttgccaaataaaata 407  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  620697 gtaaatactcaagttgcccctgaaactgttgaaccctatcaacctagtcctccacattgtcaatatttcaaaatgatatctggagttgccaaataaagta 620598  T
Q  408 aaccatcgtt 417  Q
    ||||||||||    
T  620597 aaccatcgtt 620588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 528566 - 528434
Alignment:
Q  35 agtgcctcatcaagagacagggcttggcgcgcatcggtgcgagccacaatcacaatatcagatccactctcatttctggcatcaaccgcatctttgattc 134  Q
    |||||||| |||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||  |||| ||||    
T  528566 agtgcctcttcaagagacacgccttggcgtgcatcgctgcgagccacaatcacaatatcagatccactctcacttctagcatcaactgccgctttaattc 528467  T
Q  135 acatgactgcctcttctctcgataccactttcc 167  Q
     ||| || ||||| |||||||| ||||||||||    
T  528466 tcataaccgcctcctctctcgacaccactttcc 528434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 36498305 - 36498260
Alignment:
Q  325 ccctgaaactgttgaaccgtatcaacctagtcctccacattgtcaa 370  Q
    |||||| | ||||| |||||||||||||||||||||||||| ||||    
T  36498305 ccctgacattgttggaccgtatcaacctagtcctccacattctcaa 36498260  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 33920744 - 33920703
Alignment:
Q  338 gaaccgtatcaacctagtcctccacattgtcaatatttcaaa 379  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  33920744 gaaccgtatcaacctagtccttcacattatcaatatttcaaa 33920703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 14558521 - 14558466
Alignment:
Q  328 tgaaactgttgaaccgtatcaacctagtcctccacattgtcaatatttcaaaatgat 384  Q
    ||||| |||||| | ||||||||||||||||||| ||| | ||||||||||||||||    
T  14558521 tgaaattgttgagctgtatcaacctagtcctccagattat-aatatttcaaaatgat 14558466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 27969877 - 27969918
Alignment:
Q  344 tatcaacctagtcctccacattgtcaatattt-caaaatgat 384  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  27969877 tatcaacctagtcctccacattgtcaatatttacaaaatgat 27969918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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