View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_2 (Length: 753)
Name: NF12877_low_2
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 672; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 11 - 734
Target Start/End: Original strand, 6353356 - 6354081
Alignment:
| Q |
11 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttgacttccagattcgagaatcagttcttgatcgagcaaatagtggaatggac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353356 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttgacttccagattcgagaatcagttcttgatcgagcaaatagtggaatggac |
6353455 |
T |
|
| Q |
111 |
agaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttaccataagatctt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353456 |
agaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttaccataagatctt |
6353555 |
T |
|
| Q |
211 |
tgtagtgaagaggtggcgaggtggagggtttgtgacctcgccaccattcaacattgtttcagagagaccaactccagtgcagatttattaggaaaaaaga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6353556 |
tgtagtgaagaggtggcgaggtggagggtttgtgacctcgccaccattcaacattgtttcagagagaccaactcccgtgcagatttattaggaaaaaaga |
6353655 |
T |
|
| Q |
311 |
tttgatgctcttttctttctagtttatgttaattataactgtaatttccttcatgcccttttgttaacctacacctcttattat--nnnnnnnnnctaca |
408 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6353656 |
tttgatgctcttttctttctggtttatgttaattataactgtaatttccttcatgcccttttgttaacctacacctcttattataaaaaaaaaaactaca |
6353755 |
T |
|
| Q |
409 |
aacactttttaaatgaaactcacaaaatactttcgtacaagggacagttatgttagaggtcgatagaaccaacgagggaaatatatcatttcaagggatc |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353756 |
aacactttttaaatgaaactcacaaaatactttcgtacaaggaacagttatgttagaggtcgatagaaccaacgagggaaatatatcatttcaagggatc |
6353855 |
T |
|
| Q |
509 |
tatttttcgtgagtataatcatcaatggagagtcatgcaagtagcattctggtgttgtctagttgaaacatgccttgaaatctcatgttggatatatatg |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353856 |
tatttttcgtgagtataatcatcaatggagagtcatgcaagtagcattctggtgttgtctagttgaaacatgccttgaaatctcatgttggatatatatg |
6353955 |
T |
|
| Q |
609 |
aagaaaaataactcttttcggctactgttgtatgtgctggacacagggactgttgtcctaggtgcaacaataacgcgtttcaggaaggtcctgcttctgg |
708 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6353956 |
aagaaaaataactcttttcggctactgttgtatgtgctggacacagggactgttgtcctaggtgcaacaataacacgtttcaggaaggtcctgcttctgg |
6354055 |
T |
|
| Q |
709 |
tagctgtgtagaggtcagtagagtac |
734 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
6354056 |
tagctgtgtagaggtcagtagagtac |
6354081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 23601120 - 23601262
Alignment:
| Q |
101 |
tggaatggacagaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttacc |
200 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
23601120 |
tggaatggacagaatttctgttacatcaatagcatcaaacaaattttgtatgacagaaatgttccaagaattcagactcgggtttagcaaagca-ttacc |
23601218 |
T |
|
| Q |
201 |
ataagatctttgtagtgaagaggtggcgaggtggagggtttgtg |
244 |
Q |
| |
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|||||| ||| ||||||||||||||| |||| ||||||||||| |
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| T |
23601219 |
gtaagatatttatagtgaagaggtggcaaggttgagggtttgtg |
23601262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 23601072 - 23601121
Alignment:
| Q |
11 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttg |
60 |
Q |
| |
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||||||||||| |||| |||||||||||||||| ||||| ||||||||| |
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| T |
23601072 |
ggagcagagacaataagttgttttgacagtataaactccatccaccgttg |
23601121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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