View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_24 (Length: 393)
Name: NF12877_low_24
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 41616562 - 41616921
Alignment:
| Q |
19 |
ctgatttgatttctgaacacaatagtgttattttgttgtttaagtgtaatacagaggaagaattacatgctcaaaaacaattatccatgcttcttggatt |
118 |
Q |
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| T |
41616562 |
ctgatttgatttctgaacacaatagtgttattttgttgtttaagtgtaatacagaggaagaattacatgctcaaaaacaattatccatgcttcttggatt |
41616661 |
T |
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| Q |
119 |
atcagaatgagtatattttctatgtgtagacagtgatcttaacttacttaatttgaatggttgcatcatttgcatttttgaaataccatttaaccatatt |
218 |
Q |
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| T |
41616662 |
atcagaatgagtatattttctatgtgtagacagtgatcttaacttacttaatttgaatggttgcatcatttgcattgttgaaataccatttaaccatatt |
41616761 |
T |
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| Q |
219 |
tggtttccaaatatcaaaccaaatacactctttcttgtattataatagtatttagtcatgccttaaagcttggtagtttatgaaattaaatgttgtaact |
318 |
Q |
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| T |
41616762 |
tggtttccaaatatcaaaccaaatacactctttcttgtattataatagtatttagtcatgccttaaagcttggtagtttatgaaattaaatgttgtaact |
41616861 |
T |
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| Q |
319 |
tttgttgtcaaacataatataatagttatttatcccaattgttaagcaattgtttctgtc |
378 |
Q |
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| T |
41616862 |
tttgttgtcaaacataatataatagttatttatcccaattgttaagcaattgtttctgtc |
41616921 |
T |
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