View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_25 (Length: 389)
Name: NF12877_low_25
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 20666045 - 20665698
Alignment:
| Q |
18 |
acaaaggatcctcttctggttctgacaagtgagttcgctgaaaatgtgttaattataagaatttgttgttaacattgccactacttttgatgtattttat |
117 |
Q |
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| T |
20666045 |
acaaaggatcctcttctggttctgacaagtgagttcgctgaaaatgtgttaattataagaatttgttgttaacattgccactacttttgatgtattttat |
20665946 |
T |
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| Q |
118 |
gaattgctgattgctgattttatcttttgtcacaggaaaaagcgtgaacgcgagtttaaggttacaattaagtttgcttcacagacggacctgaaccatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20665945 |
gaattgctgattgctgattttatcttttgtcacaggaaaaagcgtgaacgcgagtttaaggttacaattaagtttgcttcacagacggacctgaaccatc |
20665846 |
T |
|
| Q |
218 |
ttacccagtttctccgtcgtttgcagctagattgtccttatgaaaccattcaagctcttgatattgctttgcgggcaactccatctgaaatgtagcaata |
317 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20665845 |
ttactcagtttctccgtcgtttgcagctagattgtccttatgaaaccatacaagctcttgatattgctttgcgggcaactccatctgaaatgtagcaata |
20665746 |
T |
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| Q |
318 |
ttgttttttgtgttctttatttggtttcgctgattttgtgttttaagtga |
367 |
Q |
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| T |
20665745 |
ttgttttttgtgttctttatttggtttcgctga--ttgtgttttaagtga |
20665698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 132 - 341
Target Start/End: Complemental strand, 20690275 - 20690066
Alignment:
| Q |
132 |
tgattttatcttttgtcacaggaaaaagcgtgaacgcgagtttaaggttacaattaagtttgcttcacagacggacctgaaccatcttacccagtttctc |
231 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | | || ||||||||||| | ||||||||| |
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| T |
20690275 |
tgattttatcatttgtaacaggaaaaagcgtgaacgcgagtttaaggttacaattaagttagcttcggaacccgatttgaaccatcttgctcagtttctc |
20690176 |
T |
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| Q |
232 |
cgtcgtttgcagctagattgtccttatgaaaccattcaagctcttgatattgctttgcgggcaactccatctgaaatgtagcaatattgttttttgtgtt |
331 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||| | |||||||| |
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| T |
20690175 |
cgtcgtttgcagctggattgtccttatgaaaccatacaagctcttgatattactttgcgagcaactccatctgaaatgtagcaacattatattttgtgtg |
20690076 |
T |
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| Q |
332 |
ctttatttgg |
341 |
Q |
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||||||||| |
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| T |
20690075 |
gtttatttgg |
20690066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 20690395 - 20690351
Alignment:
| Q |
18 |
acaaaggatcctcttctggttctgacaagtgagttcgctgaaaat |
62 |
Q |
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||||||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
20690395 |
acaaaggatcctcttctggttctgacacgtgagtttgctgtaaat |
20690351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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