View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_27 (Length: 383)
Name: NF12877_low_27
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 39371942 - 39371591
Alignment:
| Q |
16 |
aaaggtggcaaagagtacaatctaaaattattttcaagaagacgataagaagaaagaggagcaccactaatcccatggttcacattggtgggaactttac |
115 |
Q |
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| T |
39371942 |
aaaggtggcaaagagtacaatctaaaattattttcaagaagacgataagaagaaagaggagcaccactaatcccatggttcacattggtgggaactttac |
39371843 |
T |
|
| Q |
116 |
aaatatttaatggagaactctctaggtatgctttgcactcattaatcttcaattttgatccaagctttgcatgtgacaatgtagcaaaataataaccttt |
215 |
Q |
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| T |
39371842 |
aaatatttaatggagaactctctaggtatgctttgcactcattaatcttcaattttgatccaagctttgcatgtgacaatgtagcaaaataataaccttt |
39371743 |
T |
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| Q |
216 |
accatttgttgcatgactgaatactgatatagggtttgtctcatttccaagctcattcacacatctacatgtaactcgtgccacagcccctgcacccctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39371742 |
accatttgttgcatgactgaatactgatatagggtttgtctcatttccaagctcattcacacatctacatgtaactcgtgccacagcccctgcacccctc |
39371643 |
T |
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| Q |
316 |
acacatgctaaatatataactaataatatatcatcaatttaaagttcaaact |
367 |
Q |
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| T |
39371642 |
acacatgctaaatatataactaataatatatcatcaatttaaagttcaaact |
39371591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 27 - 352
Target Start/End: Complemental strand, 39376517 - 39376192
Alignment:
| Q |
27 |
agagtacaatctaaaattattttcaagaagacgataagaagaaagaggagcaccactaatcccatggttcacattggtgggaactttacaaatatttaat |
126 |
Q |
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|||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||| | | |||| |
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| T |
39376517 |
agagtacaatctggaattgttttcaagaagacggtaagaagaaagaggagcaccactgatgccatggttcacatcggtgggaactttacatgtctctaat |
39376418 |
T |
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| Q |
127 |
ggagaactctctaggtatgctttgcactcattaatcttcaattttgatccaagctttgcatgtgacaatgtagcaaaataataacctttaccatttgttg |
226 |
Q |
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|||||||||||||||||||||||||| || ||||||||||| |||||||| | || |||| ||||||||||| || | ||||||||||||| || |||| |
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| T |
39376417 |
ggagaactctctaggtatgctttgcattcgttaatcttcaactttgatcccaactctgcaagtgacaatgtaacatagtaataacctttactatctgtta |
39376318 |
T |
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| Q |
227 |
catgactgaatactgatatagggtttgtctcatttccaagctcattcacacatctacatgtaactcgtgccacagcccctgcacccctcacacatgctaa |
326 |
Q |
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||||||| ||||||| |||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| ||| |
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| T |
39376317 |
catgactcaatactgttataggacctgtctcatatccaagctcattcacacattcacatgtaactcgtgctacagcccctgcatttctcacacatgataa |
39376218 |
T |
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| Q |
327 |
atatataactaataatatatcatcaa |
352 |
Q |
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|||||||| ||| |||||||||||| |
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| T |
39376217 |
atatataatcaatgatatatcatcaa |
39376192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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