View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_3 (Length: 708)
Name: NF12877_low_3
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 39693304 - 39693459
Alignment:
| Q |
73 |
gtgagcaaagtgtgactcatacgaaataacattgctcttagtttttaattcaacttttacttcacttcagaaagcatta-tttcttttata--aatcaaa |
169 |
Q |
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| T |
39693304 |
gtgagcaaagtgtgactcatacgaaataacattgctcttattttttaattcaactttt-----actgaagaaagcattattttcttctatatgaatcaaa |
39693398 |
T |
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| Q |
170 |
tactgactacctagcagaaaatatagagaaagtagaaataataatacttgcacaagtcacgggttgcattg |
240 |
Q |
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| T |
39693399 |
-------tacctaacagaaaatatacagaaagtaga---aataacacatgcacaagtcacgggttgcattg |
39693459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 39693501 - 39693575
Alignment:
| Q |
248 |
aacaattatttccgaagaaataaacacgtaacaccatatttagtagtaaatggcgcaatcaaacttccaccattgcat |
325 |
Q |
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| T |
39693501 |
aacaattatgtccaaagaaatatacacgtaacaccatatttagt---aaatggcgcaatcaaacttccaccattgcat |
39693575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 681
Target Start/End: Complemental strand, 7178990 - 7178937
Alignment:
| Q |
632 |
tccgaatcttttttaagtctatttgtc----aacatgattgcttttgaatgtta |
681 |
Q |
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| T |
7178990 |
tccgaatcttttttaagtccatttgtcaacaaacatgattgcttttgaatgtta |
7178937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 590 - 628
Target Start/End: Complemental strand, 7179221 - 7179183
Alignment:
| Q |
590 |
aaggaaggttgaaagaagtttcttagaagacgacaacat |
628 |
Q |
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| T |
7179221 |
aaggaaggttgaaagaagtttcctagaacacgacaacat |
7179183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 461 - 509
Target Start/End: Complemental strand, 22441538 - 22441490
Alignment:
| Q |
461 |
catcttgatgacatagaaaataattacaaattaatttcaaaatttatag |
509 |
Q |
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| T |
22441538 |
catctcgatgacataggaaataattatagattaatgtcaaaatttatag |
22441490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 47555331 - 47555371
Alignment:
| Q |
34 |
taagtaatcacagtatgtactctttatagcgagtaattagt |
74 |
Q |
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| T |
47555331 |
taagtaatcacaatatgtactctttataccaagtaattagt |
47555371 |
T |
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