View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_low_32 (Length: 353)

Name: NF12877_low_32
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_low_32
NF12877_low_32
[»] chr4 (16 HSPs)
chr4 (55-335)||(3816415-3816700)
chr4 (55-337)||(3808839-3809121)
chr4 (75-315)||(3956520-3956760)
chr4 (62-238)||(4024013-4024189)
chr4 (70-320)||(4001127-4001377)
chr4 (70-320)||(3933996-3934252)
chr4 (70-238)||(3985821-3985989)
chr4 (70-238)||(4217452-4217620)
chr4 (131-320)||(3800482-3800671)
chr4 (70-236)||(3920865-3921031)
chr4 (61-178)||(4008825-4008942)
chr4 (278-320)||(3920775-3920817)
chr4 (256-320)||(4009029-4009093)
chr4 (80-144)||(4017510-4017574)
chr4 (78-144)||(3964730-3964796)
chr4 (256-315)||(4217647-4217706)
[»] chr5 (1 HSPs)
chr5 (75-329)||(13396800-13397054)
[»] chr6 (4 HSPs)
chr6 (11-55)||(27682682-27682726)
chr6 (13-55)||(27690003-27690045)
chr6 (13-55)||(30230240-30230282)
chr6 (11-55)||(13143892-13143937)
[»] chr2 (2 HSPs)
chr2 (11-55)||(31712534-31712578)
chr2 (11-55)||(39156533-39156577)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 55 - 335
Target Start/End: Original strand, 3816415 - 3816700
Alignment:
55 taatttggaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaa 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| || ||||||     
3816415 taatttggaagataaatatccaattacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaac 3816514  T
155 ttctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaga--caatc-aaaacctt 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||| ||||||||    
3816515 ttctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaaaacaaatcaaaaacctt 3816614  T
252 ccataccaagaaaatac-aaaaaccgcaggttggtcatcttatc-aaatacatgacggcttaactttagctccctcattgttggca 335  Q
    | ||||||  ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
3816615 ctataccaccaaaatacaaaaaaccgcaggttggtcatcttatcaaaatacatgacggcttaacttcagctccctcattgttggca 3816700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 55 - 337
Target Start/End: Original strand, 3808839 - 3809121
Alignment:
55 taatttggaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaa 154  Q
    |||||||||||| |  |||||||||||||||||||||| |||||||||||| | |  |||||   |||||| |||||||||||||||||||| ||||||     
3808839 taatttggaagacacgtatccaattacctgcactccacgccaaagcttttccattttactatcatacaagttcaatataacaagattctctgcagaaaag 3808938  T
155 ttctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttcca 254  Q
    ||||||||||||||||||||||| || ||  |||||||||||||| ||| |  |  |||||||||||||| || ||||||||||||||  ||||  || |    
3808939 ttctctgggaatgattttagaggacaatacatccaatgaagatatcttagattagttggaaaagattgaaacctttgaggaagacaattgaaactatcta 3809038  T
255 taccaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaga 337  Q
    || ||  |||||||||||| || || ||||||||||||||||||||| || |||||||||  |||| |||||||||| |||||    
3809039 tatcaccaaaatacaaaaatcgaagtttggtcatcttatcaaatacacgagggcttaactcgagcttcctcattgttcgcaga 3809121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 75 - 315
Target Start/End: Complemental strand, 3956760 - 3956520
Alignment:
75 caattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgattttag 174  Q
    |||||| |||||||||||||||||| ||||| | ||| |||  ||||| ||||||||||||||||||||||| |||||| ||||||| || |||||||||    
3956760 caattatctgcactccacaccaaagtttttccagtaggctacctgacaggtccaatataacaagattctctgcagaaaacttctctgagagtgattttag 3956661  T
175 agggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttccataccaagaaaatacaaaaac 274  Q
    |||| |  || |||||||||||||||||| | ||  |||||||||||||| ||||| ||||| || ||| ||||| || ||  || |||||| |||||||    
3956660 agggtaacatatccaatgaagatattttagatcagttggaaaagattgaatcccttcaggaatacgatccaaaccatctatgtcacgaaaatccaaaaac 3956561  T
275 cgcaggttggtcatcttatcaaatacatgacggcttaactt 315  Q
     |||||||||||||||||||||||||||   ||||||||||    
3956560 tgcaggttggtcatcttatcaaatacattggggcttaactt 3956520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 4024013 - 4024189
Alignment:
62 gaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctg 161  Q
    ||||| |||||| || |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| || |||||| |||||||    
4024013 gaagagaaatattcacttacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaacttctctg 4024112  T
162 ggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaga 238  Q
    ||||||||||||||||| | |   |||||  ||||||| ||| | ||  ||||||||||||||||||||||||||||    
4024113 ggaatgattttagagggtaattcatccaagaaagatatcttagatcagttggaaaagattgaagcccttgaggaaga 4024189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 70 - 320
Target Start/End: Original strand, 4001127 - 4001377
Alignment:
70 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 169  Q
    |||| ||||||||||||||||||||||||| ||||| | | |||||| ||| |||||||||||||||||||||| |  |||||| |||| ||||||||||    
4001127 atattcaattacctgcactccacaccaaagattttccactcgactatgtgaaaagtccaatataacaagattctttccagaaaacttctttgggaatgat 4001226  T
170 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttccataccaagaaaataca 269  Q
    ||||||||| | | | |||||  || |||| ||| | ||  ||| ||||||||||||||||||||||||   || ||| | |   ||||||  |||| ||    
4001227 tttagagggtaatgtatccaacaaatatatcttagatcagttgggaaagattgaagcccttgaggaagaagttccaaatcgtatttaccaatgaaatcca 4001326  T
270 aaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagct 320  Q
    || | |||||||||||||||||| ||||||||||| |||||||||| ||||    
4001327 aatatcgcaggttggtcatcttagcaaatacatgagggcttaacttcagct 4001377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 320
Target Start/End: Complemental strand, 3934252 - 3933996
Alignment:
70 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 169  Q
    |||| |||||||||| ||||||||||| |||||||| | | |||||    ||||||||||||||||||||||||||| |||||| |||||||||||||||    
3934252 atattcaattacctgtactccacaccatagcttttccattcgactaagatacaagtccaatataacaagattctctgcagaaaacttctctgggaatgat 3934153  T
170 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaa---ccttccataccaa---gaa 263  Q
    ||||||||| |  ||  ||||||||||||| | | ||||  ||||||||||| |||||||||||||| |  ||| |||    | || | | |||    ||    
3934152 tttagagggtaacatacccaatgaagatatctaagaccagttggaaaagattcaagcccttgaggaaaaagatccaaatagtcatcaaaatcaacccaaa 3934053  T
264 aatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagct 320  Q
    ||| ||||||  | ||||||||||||||||||||||||||| |||||||||||||||    
3934052 aattcaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagct 3933996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 70 - 238
Target Start/End: Original strand, 3985821 - 3985989
Alignment:
70 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 169  Q
    |||| |||||||||| |||||||||||||||||||| | ||| ||||| |||||||||||||||||||| ||||||| |||||| |||| ||| |||||     
3985821 atattcaattacctgtactccacaccaaagcttttctactaggctatacgacaagtccaatataacaagtttctctgcagaaaacttctttggcaatgac 3985920  T
170 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaga 238  Q
    | ||||||| | | |  ||||||||||||| ||| | ||  |||||||| |||||||||||||||||||    
3985921 tctagagggtaatgtacccaatgaagatatcttagatcagttggaaaaggttgaagcccttgaggaaga 3985989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 70 - 238
Target Start/End: Original strand, 4217452 - 4217620
Alignment:
70 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 169  Q
    |||| |||||||||| |||||||||||||||||||| | |  ||||||   ||||| |||||||||||||||||||| |||||| |||||||||||||||    
4217452 atattcaattacctgtactccacaccaaagcttttccactttactataacgcaagttcaatataacaagattctctgcagaaaagttctctgggaatgat 4217551  T
170 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaga 238  Q
    ||||||||| |  ||  |||| |||||||| ||| | ||  ||||||||||||||||||| ||||||||    
4217552 tttagagggtaacatacccaacgaagatatcttagatcatttggaaaagattgaagccctcgaggaaga 4217620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 320
Target Start/End: Original strand, 3800482 - 3800671
Alignment:
131 ataacaagattctctgaagaaaaattctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagccctt 230  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||| | |   |||||||||||||| ||| | ||  ||||||||||||||||||||    
3800482 ataacaagattctttgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttggaaaagattgaagccctt 3800581  T
231 gaggaagacaatcaaaaccttccataccaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagct 320  Q
    ||||||||   || ||| | |   ||||| |||||| |||| | |||| ||||||||||||| ||||||||||| |||||||||| ||||    
3800582 gaggaagaagttccaaatcgtatttaccatgaaaatccaaatatcgcaagttggtcatcttagcaaatacatgagggcttaacttcagct 3800671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 3921031 - 3920865
Alignment:
70 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 169  Q
    |||| |||||||||| ||||||||||| |||||||| | | ||| |    ||||||||||||||||||||||||| | | |||| ||||||| |||||||    
3921031 atattcaattacctgtactccacaccatagcttttccattcgaccaagatacaagtccaatataacaagattctcagcaaaaaacttctctgagaatgat 3920932  T
170 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaa 236  Q
    ||||||||| | | | |||||||||||||| ||| ||||  ||||||||||| ||||||||||||||    
3920931 tttagagggtaatctatccaatgaagatatcttaaaccagttggaaaagattcaagcccttgaggaa 3920865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 4008825 - 4008942
Alignment:
61 ggaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctct 160  Q
    |||||||| |||  ||||||||| ||||||| ||||||||||||| | | | ||| |||||||||| ||||||||||||||||| | |||||| |||| |    
4008825 ggaagatacatagtcaattaccttcactccataccaaagcttttctacttggctaaatgacaagtcaaatataacaagattctccgcagaaaacttcttt 4008924  T
161 gggaatgattttagaggg 178  Q
    || |||||||||||||||    
4008925 ggcaatgattttagaggg 4008942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 3920817 - 3920775
Alignment:
278 aggttggtcatcttatcaaatacatgacggcttaactttagct 320  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
3920817 aggttggtcatcttatcaaatacatgagggcttaactttagct 3920775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 4009029 - 4009093
Alignment:
256 accaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagct 320  Q
    |||| |||||| ||||||  ||||||||||||||||| ||||||||||| |||||||||| ||||    
4009029 accatgaaaatccaaaaatagcaggttggtcatcttagcaaatacatgagggcttaacttcagct 4009093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 4017510 - 4017574
Alignment:
80 acctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctc 144  Q
    ||||||||||||  ||| |||||||||| | ||||||||||||||||||||||||| || |||||    
4017510 acctgcactccatgccagagcttttcaactcgactatatgacaagtccaatataacgagtttctc 4017574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 3964796 - 3964730
Alignment:
78 ttacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctc 144  Q
    ||||||||||||||  ||| || ||||||| | ||||||||||||||||||||||||| || |||||    
3964796 ttacctgcactccatgccagagtttttcaactcgactatatgacaagtccaatataacgagtttctc 3964730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 4217647 - 4217706
Alignment:
256 accaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactt 315  Q
    ||||| ||||| ||||||   |||||||||||||||| ||||||||||| ||||||||||    
4217647 accaaaaaaattcaaaaatttcaggttggtcatcttagcaaatacatgagggcttaactt 4217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 75 - 329
Target Start/End: Original strand, 13396800 - 13397054
Alignment:
75 caattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgattttag 174  Q
    |||||||||| |||||||||||||||||||| |  || ||||||| |||| ||| |||||||||||| ||   |||||| ||||||||||||||||||||    
13396800 caattacctgtactccacaccaaagcttttctacaaggctatatggcaagcccagtataacaagattatcaacagaaaacttctctgggaatgattttag 13396899  T
175 agggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttccataccaagaaaatacaaaaac 274  Q
    |||| | |   |||||| ||||||| ||| | ||  ||||||| ||||||||||||||||||||| ||| ||||| || ||| || |||||||||||||     
13396900 agggtaatgcatccaataaagatatcttagatcagttggaaaaaattgaagcccttgaggaagacgatccaaaccgtctatatcatgaaaatacaaaaat 13396999  T
275 cgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattg 329  Q
      ||||||||||||||||||||||||| |  |||||||||| |||| ||| ||||    
13397000 ttcaggttggtcatcttatcaaatacaggcgggcttaacttcagcttcctaattg 13397054  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 27682726 - 27682682
Alignment:
11 cagagagagctacgggaggaagagaaagaatgagggaagtgttat 55  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
27682726 cagagagagctacgggaggaaaagaaagaatgagggaagtgttat 27682682  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 27690045 - 27690003
Alignment:
13 gagagagctacgggaggaagagaaagaatgagggaagtgttat 55  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
27690045 gagagagctacgggaggaaaagaaagaatgagggaagtgttat 27690003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 30230240 - 30230282
Alignment:
13 gagagagctacgggaggaagagaaagaatgagggaagtgttat 55  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
30230240 gagagagctacgggaggaaaagaaagaatgagggaagtgttat 30230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 13143892 - 13143937
Alignment:
11 cagagagagctacgggaggaagagaaag-aatgagggaagtgttat 55  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||    
13143892 cagagagagctacgggaggaaaagaaagaaatgaggaaagtgttat 13143937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 31712578 - 31712534
Alignment:
11 cagagagagctacgggaggaagagaaagaatgagggaagtgttat 55  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
31712578 cagagagagctacgggaggaaaagaaagaatgagggaagtgttat 31712534  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 39156533 - 39156577
Alignment:
11 cagagagagctacgggaggaagagaaagaatgagggaagtgttat 55  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
39156533 cagagagagctacgggaggaaaagaaagaatgagggaagtgttat 39156577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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