View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_low_33 (Length: 352)

Name: NF12877_low_33
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_low_33
NF12877_low_33
[»] chr1 (19 HSPs)
chr1 (14-352)||(3300793-3301130)
chr1 (14-352)||(43045059-43045394)
chr1 (161-352)||(43045656-43045847)
chr1 (161-352)||(43066560-43066751)
chr1 (161-352)||(43084084-43084275)
chr1 (161-351)||(45993378-45993568)
chr1 (161-352)||(45983597-45983782)
chr1 (161-352)||(38137745-38137936)
chr1 (167-352)||(7888664-7888849)
chr1 (195-349)||(7890932-7891086)
chr1 (161-352)||(40034585-40034768)
chr1 (14-85)||(43066861-43066932)
chr1 (14-85)||(43083903-43083974)
chr1 (16-76)||(38138019-38138079)
chr1 (279-349)||(43076676-43076746)
chr1 (21-76)||(45983861-45983916)
chr1 (21-74)||(7891113-7891166)
chr1 (23-76)||(50912450-50912503)
chr1 (21-76)||(40034852-40034907)
[»] chr4 (2 HSPs)
chr4 (157-349)||(4231672-4231864)
chr4 (14-88)||(4231524-4231598)
[»] chr5 (1 HSPs)
chr5 (162-352)||(16349349-16349539)
[»] chr6 (2 HSPs)
chr6 (164-340)||(7519616-7519792)
chr6 (164-340)||(7528987-7529163)
[»] chr2 (6 HSPs)
chr2 (161-352)||(34691036-34691227)
chr2 (161-352)||(34713448-34713639)
chr2 (161-349)||(33861045-33861233)
chr2 (162-352)||(16232380-16232574)
chr2 (18-75)||(34690909-34690966)
chr2 (18-75)||(34713321-34713378)
[»] chr8 (6 HSPs)
chr8 (161-274)||(4787429-4787536)
chr8 (124-352)||(4297648-4297873)
chr8 (230-352)||(1846670-1846792)
chr8 (288-352)||(4620026-4620090)
chr8 (161-227)||(4619893-4619959)
chr8 (21-74)||(1846555-1846608)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 352
Target Start/End: Original strand, 3300793 - 3301130
Alignment:
Q  14 acttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgttcacgatagcaagacaatgagaatttgtataaataaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300793 acttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgttcacgatagcaagacaatgagaatttgtataaataaa 3300892  T
Q  114 gtaatcacagaaataatcaaatgcatcttcaaagggctaaaacgttcaaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3300893 gtaatcacagaaataatcaaatgcatcttcaaagggctaaaacgttcaaataccttgttgcagcaa-aaatcatttgcttcacaccaagagtgaaagcaa 3300991  T
Q  214 gaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgt 313  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300992 gaagagcgtgttcacgggtctgcccatcctttgatataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgt 3301091  T
Q  314 tccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3301092 tccagtaatcatgttcttaatgaaatccctgtgtccggg 3301130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 14 - 352
Target Start/End: Original strand, 43045059 - 43045394
Alignment:
Q  14 acttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgttcacgatagcaagacaatgagaatttgta--taaata 111  Q
    ||||||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||| |||||       |||  |||| |||  ||||||    
T  43045059 acttccttcacaatttcatcatatctacccttggagtacttgggtgtagtagcatccatctgttcaagatag-------atgcaaattagtacttaaata 43045151  T
Q  112 aagtaatcacagaaataatcaaatg--catcttcaaagggctaaaacgttcaaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaa 209  Q
    ||  ||| | | ||||||||||||   || |||||| ||||| |||   | ||||||||||||||| || || |||||||||||||||||||||||||||    
T  43045152 aatgaattataaaaataatcaaatatacaacttcaaggggctgaaaatattaaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaa 43045251  T
Q  210 gcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttggg 309  Q
    ||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  43045252 gcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttggg 43045351  T
Q  310 atgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  43045352 atgttccggtgatcatgttcttaatgaaatccctgtgtccggg 43045394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 161 - 352
Target Start/End: Original strand, 43045656 - 43045847
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||    
T  43045656 aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttca 43045755  T
Q  261 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  43045756 aaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccggg 43045847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 43066751 - 43066560
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||    
T  43066751 aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttca 43066652  T
Q  261 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  43066651 aaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccggg 43066560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 161 - 352
Target Start/End: Original strand, 43084084 - 43084275
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||    
T  43084084 aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttca 43084183  T
Q  261 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  43084184 aaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccggg 43084275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 161 - 351
Target Start/End: Complemental strand, 45993568 - 45993378
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  45993568 aaataccttgttgcagcaacagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgagtctgaccatcctttgaaataccggcttca 45993469  T
Q  261 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgg 351  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||| || || || |||||||||||||||||||||||||||||||    
T  45993468 aaaccacgagtagtggaatcaatgatgagaacagcacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgg 45993378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 45983782 - 45983597
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||| |      ||||||||||||    
T  45983782 aaataccttgttgcagcagcagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgggtctgaccattc------ataccggcttca 45983689  T
Q  261 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    |||||||| ||||||||||||||||  ||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  45983688 aaaccaccagtagtggaatcaatgacgagaacagcacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccggg 45983597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 38137936 - 38137745
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    |||||||||||||||||| || ||||||||   ||||||||||  ||| ||||||||||| ||||||  |||||| || ||||  |||  ||| ||||||    
T  38137936 aaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttca 38137837  T
Q  261 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    |||| ||| || |||||||||||||  ||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||    
T  38137836 aaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgtccggg 38137745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 167 - 352
Target Start/End: Complemental strand, 7888849 - 7888664
Alignment:
Q  167 cttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaacca 266  Q
    |||||||||||| || |||||||  |  ||||| |||| ||| |||||  || | ||||||  |||||| ||||||||  ||| ||||||||||||||||    
T  7888849 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 7888750  T
Q  267 ccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    || || |||||||||||||| |||||||||||||||||||  || |  || || ||||||||||| ||||||||||||||||||||    
T  7888749 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgtccggg 7888664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 349
Target Start/End: Complemental strand, 7891086 - 7890932
Alignment:
Q  195 acaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaaccaccggtagtggaatcaatgatcagaacag 294  Q
    |||||||||| ||| |||||  || | ||||||  |||||| |||| |||  ||| ||| || |||||||||||    || ||||||||||| |||||||    
T  7891086 acaccaagagcgaatgcaagttgaacatgttcagtggtctgaccattcttacaaaaaccagcgtcaaaaccaccaagtgtagaatcaatgataagaacag 7890987  T
Q  295 cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtcc 349  Q
    |||| ||||||| ||| | |||||| |||||||||||||||||||||||||||||    
T  7890986 cacagtcagcttcggacgctccagtgatcatgttcttaatgaaatccctgtgtcc 7890932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 40034768 - 40034585
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    |||||||||||||||||| || |||||||| ||||||||||||||  | ||||||||||| ||||||  |||||| |||    |||  ||||| |  |||    
T  40034768 aaataccttgttgcagcagcagatcatttgattcacaccaagagtataggcaagaagagcatgttcagtggtctgacca----ttg--ataccagtctca 40034675  T
Q  261 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    |||| ||| ||  ||||||||||||| ||||||||||| |||||| |||| || || || | ||||||||| |||||||  |||||||||||    
T  40034674 aaactaccagttctggaatcaatgatgagaacagcacagtcagctagggacgtgccggttaacatgttcttgatgaaat--ctgtgtccggg 40034585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 43066932 - 43066861
Alignment:
Q  14 acttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgttcacgatag 85  Q
    ||||||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||| |||||    
T  43066932 acttccttcacaatttcatcatatctacccttggagtacttgggtgtagtagcatccatctgttcaagatag 43066861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 43083903 - 43083974
Alignment:
Q  14 acttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgttcacgatag 85  Q
    ||||||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||| |||||    
T  43083903 acttccttcacaatttcatcatatctacccttggagtacttgggtgtagtagcatccatctgttcaagatag 43083974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 38138079 - 38138019
Alignment:
Q  16 ttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgt 76  Q
    ||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||    
T  38138079 ttccttcacaatttcttcatacctatccttggagtatttgggtgtagtggcatccatctgt 38138019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 43076746 - 43076676
Alignment:
Q  279 tcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtcc 349  Q
    |||| ||| |||| |||||||||||||||||| || ||||| ||||||||||||||||||| | |||||||    
T  43076746 tcaaggataagaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcc 43076676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 45983916 - 45983861
Alignment:
Q  21 tcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgt 76  Q
    ||||||||||| |||||||| || | ||||| ||||||||||||||||||||||||    
T  45983916 tcacaatttctacatacctatccctagagtatttaggtgtagtggcatccatctgt 45983861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 7891166 - 7891113
Alignment:
Q  21 tcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatct 74  Q
    ||||||||| |||||||||| |||| ||||| || |||||||||||||||||||    
T  7891166 tcacaatttgttcatacctatccttggagtatttgggtgtagtggcatccatct 7891113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 50912450 - 50912503
Alignment:
Q  23 acaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgt 76  Q
    ||||||||||||||||||||||| ||||| || || ||||| ||||||||||||    
T  50912450 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgt 50912503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 40034907 - 40034852
Alignment:
Q  21 tcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgt 76  Q
    |||||| ||||||| |||||||||| ||||| || |||||||| ||||||||||||    
T  40034907 tcacaagttcttcaaacctacccttagagtatttgggtgtagttgcatccatctgt 40034852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 4231672 - 4231864
Alignment:
Q  157 gttcaaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggc 256  Q
    |||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||    
T  4231672 gttcaaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagc 4231771  T
Q  257 ttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtcc 349  Q
    |||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4231772 ttcaaaaccaccagtggtggaatcaatgatgagaacagcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtcc 4231864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 4231524 - 4231598
Alignment:
Q  14 acttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgttcacgatagcaa 88  Q
    ||||||||||||||||| |||||||| | ||| |||||||| || |||||||| |||||||||||| ||||||||    
T  4231524 acttccttcacaatttcatcatacctgctcttggagtacttgggagtagtggcgtccatctgttcaagatagcaa 4231598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 162 - 352
Target Start/End: Original strand, 16349349 - 16349539
Alignment:
Q  162 aataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaa 261  Q
    ||||||||||||||||| || ||||||||||| |||||||||| | ||||| | ||||| ||||||||| |||| ||||  || |||||||||||| |||    
T  16349349 aataccttgttgcagcagcagatcatttgcttgacaccaagagagtaagcatggagagcatgttcacggatctgaccattattggaaataccggctccaa 16349448  T
Q  262 aaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    ||||| | | ||||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16349449 aaccagcaggagtggaatcaacgataagaagagcacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccggg 16349539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 340
Target Start/End: Complemental strand, 7519792 - 7519616
Alignment:
Q  164 taccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaa 263  Q
    ||||||||| || ||||| ||||| |||||||| |||||||| || ||||||||||| || ||||||||||| |||||||| || ||||| |||||||||    
T  7519792 taccttgttacaacaacagatcatctgcttcactccaagagtaaatgcaagaagagcatgctcacgggtctgtccatccttagagataccagcttcaaaa 7519693  T
Q  264 ccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatc 340  Q
    ||||| || ||||| |||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  7519692 ccaccagtggtggagtcaatgataaggacagcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatc 7519616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 340
Target Start/End: Complemental strand, 7529163 - 7528987
Alignment:
Q  164 taccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaa 263  Q
    ||||||||| || ||||| ||||| |||||||| |||||||| || |||||||||||||| ||||||||||| |||||||| || ||||| |||||||||    
T  7529163 taccttgttacaacaacagatcatctgcttcactccaagagtaaatgcaagaagagcgtgctcacgggtctgtccatccttagagataccagcttcaaaa 7529064  T
Q  264 ccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatc 340  Q
    ||||| || ||||| |||||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  7529063 ccaccagtggtggagtcaatgataagcacggcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatc 7528987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 352
Target Start/End: Original strand, 34691036 - 34691227
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||| ||||| | |||||| |||| ||| ||   ||| |||       
T  34691036 aaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgc 34691135  T
Q  261 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    ||||| |  ||||| ||||||||||  ||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||||||||    
T  34691136 aaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccggg 34691227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 352
Target Start/End: Original strand, 34713448 - 34713639
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||| ||||| | |||||| |||| ||| ||   ||| |||       
T  34713448 aaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgc 34713547  T
Q  261 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    ||||| |  ||||| ||||||||||  ||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||||||||    
T  34713548 aaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccggg 34713639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 349
Target Start/End: Original strand, 33861045 - 33861233
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    |||||||||||||  ||| || ||||||||   ||||||||||||| | || ||||| || |||||||||||||| |||| ||| |||| |||  |||||    
T  33861045 aaataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccatgcttagaaaaaccaacttca 33861144  T
Q  261 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtcc 349  Q
    |||||||| | || |||||||| ||| |||| ||| |||||||| | |||||| ||| ||||||||||||||||  |||||||||||||    
T  33861145 aaaccaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatataatccctgtgtcc 33861233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 352
Target Start/End: Original strand, 16232380 - 16232574
Alignment:
Q  162 aataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaa 261  Q
    ||||||||||||||||| || ||||||||| |||||||||||||| | ||||| ||||| ||||| | |||||| |||||||| ||   ||| ||||  |    
T  16232380 aataccttgttgcagcagcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgca 16232479  T
Q  262 aaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttc----ttaatgaaatccctgtgtccggg 352  Q
    ||||    ||||||||||  ||||  ||||||||||| ||||||| ||| || ||  | |||||||||    |||||||||||||||||||||||    
T  16232480 aaccgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccgatgatcatgttcttaattaatgaaatccctgtgtccggg 16232574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 34690909 - 34690966
Alignment:
Q  18 ccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctg 75  Q
    |||||||||||  |||||||||| |||| ||||| || |||||| |||||||||||||    
T  34690909 ccttcacaattagttcatacctatccttggagtatttgggtgtaatggcatccatctg 34690966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 34713321 - 34713378
Alignment:
Q  18 ccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctg 75  Q
    |||||||||||  |||||||||| |||| ||||| || |||||| |||||||||||||    
T  34713321 ccttcacaattagttcatacctatccttggagtatttgggtgtaatggcatccatctg 34713378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 274
Target Start/End: Complemental strand, 4787536 - 4787429
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 260  Q
    |||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||| |||||| ||||||| |||| |      ||||||||||||    
T  4787536 aaataccttgttgcagcagcagatcatttgcttcacaccaacagtgaaggcaagaagagcatgttcaagggtctgaccattc------ataccggcttca 4787443  T
Q  261 aaaccaccggtagt 274  Q
    |||||||| |||||    
T  4787442 aaaccaccagtagt 4787429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 124 - 352
Target Start/End: Original strand, 4297648 - 4297873
Alignment:
Q  124 aaataatcaaatgca-tcttcaaagggctaaaacgttcaaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgt 222  Q
    |||||||||||| || |||| || |||||||||  | ||||||||||||||||||| || || ||||| ||| |||||||| |||| ||||||||||| |    
T  4297648 aaataatcaaatacaatcttaaacgggctaaaaa-tacaaataccttgttgcagcagcagataatttgattcgcaccaagattgaaggcaagaagagcat 4297746  T
Q  223 gttcacgggtctgcccatcctttgaaataccggcttcaaaaccacc---ggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagt 319  Q
    |||||  |||||| |||  |      ||||||||||||||||||||    ||||||||||||||||  |||||| |||| | |||| |||| | ||||||    
T  4297747 gttcaaaggtctgaccaatc------ataccggcttcaaaaccaccagtagtagtggaatcaatgacgagaacatcacagttagctagggacgctccagt 4297840  T
Q  320 aatcatgttcttaatgaaatccctgtgtccggg 352  Q
      |||||||||||||| | ||||| ||||||||    
T  4297841 ggtcatgttcttaatgcattccctatgtccggg 4297873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 230 - 352
Target Start/End: Original strand, 1846670 - 1846792
Alignment:
Q  230 ggtctgcccatcctttgaaataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttc 329  Q
    |||||| |||| |||  ||| ||| |||||||||||||| |  || || |||||||| ||||| ||||| ||||||| ||||| ||| || |||||||||    
T  1846670 ggtctgaccattcttacaaaaaccagcttcaaaaccaccaggtgtagagtcaatgataagaacggcacagtcagcttcggatgctccggtgatcatgttc 1846769  T
Q  330 ttaatgaaatccctgtgtccggg 352  Q
    |||||||||||||||||||||||    
T  1846770 ttaatgaaatccctgtgtccggg 1846792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 4620026 - 4620090
Alignment:
Q  288 agaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccggg 352  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||    
T  4620026 agaacagcacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccggg 4620090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 4619893 - 4619959
Alignment:
Q  161 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttca 227  Q
    ||||||||||||| |||| || |||||||||||||||||||| || |||||||| | ||| ||||||    
T  4619893 aaataccttgttgtagcagcagatcatttgcttcacaccaagggttaaagcaaggacagcatgttca 4619959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 1846555 - 1846608
Alignment:
Q  21 tcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatct 74  Q
    ||||||||| |||||||||| |||| ||||| || |||||||||||||||||||    
T  1846555 tcacaatttgttcatacctatccttggagtatttgggtgtagtggcatccatct 1846608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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