View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_low_34 (Length: 345)

Name: NF12877_low_34
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_low_34
NF12877_low_34
[»] chr5 (1 HSPs)
chr5 (36-155)||(22803919-22804037)
[»] scaffold0059 (1 HSPs)
scaffold0059 (27-155)||(35062-35190)
[»] chr7 (1 HSPs)
chr7 (270-335)||(5542414-5542480)
[»] chr3 (1 HSPs)
chr3 (270-335)||(2668981-2669046)
[»] chr1 (3 HSPs)
chr1 (95-155)||(17019885-17019944)
chr1 (36-155)||(21306646-21306765)
chr1 (88-152)||(18217888-18217952)
[»] chr8 (1 HSPs)
chr8 (118-155)||(24899831-24899868)
[»] chr2 (2 HSPs)
chr2 (36-155)||(24987783-24987902)
chr2 (36-153)||(25566748-25566865)
[»] chr4 (1 HSPs)
chr4 (270-336)||(18869088-18869154)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 22803919 - 22804037
Alignment:
Q  36 tcttcttcatgattcgaccattctttgaccatcatttgggtcagtagttttgtcttcaaggcttaaagcaacgccttttttggacctctggtactttctc 135  Q
    |||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||||||||  |||||||||||||||||||||||||||| |||||    
T  22803919 tcttcttcttgattcgaccattctttgaccatcatttgggtcaacagttt-gtcttcaaggcttgcagcaacgccttttttggacctctggtaccttctc 22804017  T
Q  136 cattgagtccttgtcatggg 155  Q
    ||||||||||||||||||||    
T  22804018 cattgagtccttgtcatggg 22804037  T

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Target: scaffold0059 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 35062 - 35190
Alignment:
Q  27 tttcgctgatcttcttcatgattcgaccattctttgaccatcatttgggtcagtagttttgtcttcaaggcttaaagcaacgccttttttggacctctgg 126  Q
    |||||||| |||||||| | ||| |||||||||||||  ||||||||||||| |||||||||||| |||||||  ||||| ||||||||||||| |||      
T  35062 tttcgctggtcttcttcctaatttgaccattctttgattatcatttgggtcaatagttttgtcttgaaggcttgcagcaatgccttttttggacatctac 35161  T
Q  127 tactttctccattgagtccttgtcatggg 155  Q
    ||| ||||||||||||| |||||||||||    
T  35162 taccttctccattgagttcttgtcatggg 35190  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 5542480 - 5542414
Alignment:
Q  270 aagagtaatggcatagctgtcatttcacata-cataagtttctatacttaaggctaagtcaacaatt 335  Q
    ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  5542480 aagagtaatggcatagctgtcatttcaaaaaacataagtttctatacttaaggctaagtcaacaatt 5542414  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 2668981 - 2669046
Alignment:
Q  270 aagagtaatggcatagctgtcatttcacatacataagtttctatacttaaggctaagtcaacaatt 335  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  2668981 aagagtaatgacatagttgtcatttcacaaacataagtttctatacttaagactaagtcaacaatt 2669046  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 17019885 - 17019944
Alignment:
Q  95 ggcttaaagcaacgccttttttggacctctggtactttctccattgagtccttgtcatggg 155  Q
    ||||| |||||| |||||||| | ||||||||||| |||||||||||||||||||||||||    
T  17019885 ggcttgaagcaatgccttttt-gaacctctggtaccttctccattgagtccttgtcatggg 17019944  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 21306765 - 21306646
Alignment:
Q  36 tcttcttcatgattcgaccattctttgaccatcatttgggtcagtagttttgtcttcaaggcttaaagcaacgccttttttggacctctggtactttctc 135  Q
    |||||||  ||||||||||||||| ||| || | |||||||||  ||| |  ||||||||||||  || ||| ||||| ||  ||| || |||| |||||    
T  21306765 tcttctttttgattcgaccattctctgatcaccctttgggtcaacagtctcatcttcaaggcttgtagaaactcctttcttaaaccgctagtaccttctc 21306666  T
Q  136 cattgagtccttgtcatggg 155  Q
    |||||||| |||||||||||    
T  21306665 cattgagttcttgtcatggg 21306646  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 18217952 - 18217888
Alignment:
Q  88 tcttcaaggcttaaagcaacgccttttttggacctctggtactttctccattgagtccttgtcat 152  Q
    ||||||||||||  || || | |||| ||||||||||||||| | ||||||||||| ||||||||    
T  18217952 tcttcaaggcttgtagaaatgtctttcttggacctctggtacctcctccattgagttcttgtcat 18217888  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 24899831 - 24899868
Alignment:
Q  118 gacctctggtactttctccattgagtccttgtcatggg 155  Q
    |||||||||||| |||||||||||||||||||||||||    
T  24899831 gacctctggtaccttctccattgagtccttgtcatggg 24899868  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 24987902 - 24987783
Alignment:
Q  36 tcttcttcatgattcgaccattctttgaccatcatttgggtcagtagttttgtcttcaaggcttaaagcaacgccttttttggacctctggtactttctc 135  Q
    |||||||| ||||||||||||||| ||| || | |||||||||  ||| |  ||||||||||||  || || | |||  || || ||||||||| |||||    
T  24987902 tcttcttcttgattcgaccattctctgatcaccctttgggtcaacagtctcatcttcaaggcttgtagaaatgtcttccttagatctctggtaccttctc 24987803  T
Q  136 cattgagtccttgtcatggg 155  Q
    |||||||| ||| |||||||    
T  24987802 cattgagttcttatcatggg 24987783  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 25566865 - 25566748
Alignment:
Q  36 tcttcttcatgattcgaccattctttgaccatcatttgggtcagtagttttgtcttcaaggcttaaagcaacgccttttttggacctctggtactttctc 135  Q
    |||||||  |||| ||||| |||| ||| || |||||||||||  |||||  ||||||||||||  || || | |||| ||||||||| ||||| | |||    
T  25566865 tcttctttttgatacgaccgttctctgatcaccatttgggtcaacagtttcatcttcaaggcttgtagaaatgtctttcttggacctccggtacctcctc 25566766  T
Q  136 cattgagtccttgtcatg 153  Q
    |||||| | |||||||||    
T  25566765 cattgatttcttgtcatg 25566748  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 18869154 - 18869088
Alignment:
Q  270 aagagtaatggcatagctgtcatttcacatacataagtttctatacttaaggctaagtcaacaatta 336  Q
    ||||||||||||| ||||||||||| |||  ||||||| | |||| ||||| | |||||||||||||    
T  18869154 aagagtaatggcaaagctgtcattttacaatcataagtctttataattaagaccaagtcaacaatta 18869088  T

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