View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_35 (Length: 335)
Name: NF12877_low_35
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 37696739 - 37696440
Alignment:
| Q |
15 |
agcacagaggtaatcaaaagaagtgtcacaaatggttgaactttttacttggcaatagaggaggatgaaagtggaggaagatatttggaatggtgcagtt |
114 |
Q |
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| T |
37696739 |
agcacaaaggtaatcaaaagaagtgtcacaaatggttgaactttttacttggcaatggaggaggatgaaagtggaggaagatatttggaatggtgcagtt |
37696640 |
T |
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| Q |
115 |
aaatctatgccaaagtttggtgaggtttgcatggtagtgcaagtagacatgtagggtggtgtgagtattagagtggaagtggtgtatgaaatggaggtta |
214 |
Q |
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| T |
37696639 |
aaatctatgccaaagtttggtgaggtttgcatggtagtgcaagtagacatgtagggtggtgtgagtattagagtggaagtggtgtatgaaatggaggtta |
37696540 |
T |
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| Q |
215 |
tagggtatgaggatgtgtgagttttgaggatgagttggtctaatgttccatttgatgtgcatgttatgtatgggttgaatagtggggacccgcaaccagg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37696539 |
tagggtatgaggatgtgtgagttttgaggatgagttggtctaatgttccatttgatgtgcatgttatgtatgggttgaatagtggggacccgcaaccagg |
37696440 |
T |
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