View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_low_36 (Length: 326)

Name: NF12877_low_36
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_low_36
NF12877_low_36
[»] chr4 (2 HSPs)
chr4 (23-320)||(40820556-40820855)
chr4 (35-269)||(40825236-40825472)
[»] chr7 (14 HSPs)
chr7 (23-320)||(20292991-20293285)
chr7 (65-291)||(20169502-20169730)
chr7 (29-293)||(20272206-20272472)
chr7 (23-157)||(20302353-20302487)
chr7 (63-293)||(20277950-20278182)
chr7 (114-293)||(20282528-20282711)
chr7 (23-174)||(20300263-20300414)
chr7 (199-293)||(20064097-20064191)
chr7 (23-100)||(20090468-20090545)
chr7 (199-292)||(20230055-20230148)
chr7 (29-262)||(20287673-20287911)
chr7 (24-269)||(20242028-20242275)
chr7 (96-269)||(20262661-20262836)
chr7 (29-144)||(20230205-20230320)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 320
Target Start/End: Original strand, 40820556 - 40820855
Alignment:
Q  23 agctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactcc 122  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40820556 agctacaccttctgcaaattctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatcctttcacactcc 40820655  T
Q  123 aaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttc--tgtttctgggtacaaatcctcgaaaacagctacatattggcgagc 220  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  40820656 aaaggtgtcctcctaacacaccgacccgtccaattatgtatactccattcttctatgtttctgggtacaaatcctctaaaacagctacatattggcgagc 40820755  T
Q  221 tcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgtccatgtcatgtcactttcatttctttcttctca 320  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40820756 tcaataaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgtccatgtcatgtcactttcatttctttcttctca 40820855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 269
Target Start/End: Original strand, 40825236 - 40825472
Alignment:
Q  35 tgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctc 134  Q
    ||||||||| | ||||| ||||   ||||||||||||||||||| |||||||||||| || || |||||  ||| | || |||||| |||| |||||||     
T  40825236 tgcaaaatcaggaactttaaccatctgcaatttcaaaaacccatcttcctttgtacttgttgtcttattattgaccttttcacactgcaaaagtgtcctt 40825335  T
Q  135 gtaacacaccgacccgtccaattatgtatactccattc--ttctgtttctgggtacaaatcctcgaaaacagctacatattggcgagctcattaaactac 232  Q
     ||||||||| ||| ||||| || ||| || |||| ||   | |||| |||||| |||||||||  ||||| || ||||| ||  |  ||| | ||||||    
T  40825336 ctaacacacccacctgtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactac 40825435  T
Q  233 agcttgcaaatgctgcacatataccataaacatcaca 269  Q
    |||||| ||||||  |||||||||||||||| |||||    
T  40825436 agcttgaaaatgccccacatataccataaacgtcaca 40825472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 320
Target Start/End: Complemental strand, 20293285 - 20292991
Alignment:
Q  23 agctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactcc 122  Q
    ||||||||||||||||||||||| ||||| ||||   | ||||||||||||||||| |||||||||||| |||||||||||| ||| |||| ||||||||    
T  20293285 agctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactcc 20293186  T
Q  123 aaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttc--tgtttctgggtacaaatcctcgaaaacagctacatattggcgagc 220  Q
    |||||||||||| ||||||||| ||| |||||||||||| |||||||||||||  |||||||||||||||||||||  ||||||||||||||||| ||||    
T  20293185 aaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagc 20293086  T
Q  221 tcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgtccatgtcatgtcactttcatttctttcttctca 320  Q
    ||| | |||||||||||||||| ||  |||||||||||||||||||||||| |||||||||| |||||     |||||||||||||||||||||||||||    
T  20293085 tcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtc-----catgtcactttcatttctttcttctca 20292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 65 - 291
Target Start/End: Original strand, 20169502 - 20169730
Alignment:
Q  65 tttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtata 164  Q
    |||||||||||||| |||||||||||| |||||||||||| ||| |||| |||||| ||||||||||||   |||||||| ||| ||||| |||||||||    
T  20169502 tttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaaggtgtccttcgaacacacccaccggtccagttatgtata 20169601  T
Q  165 ctccattcttc--tgtttctgggtacaaatcctcgaaaacagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaa 262  Q
     |||||| |||  ||||||||||| |||| ||||  |||||||||||| |||| ||||||| | || |||| |||||||||||  ||||||   | ||||    
T  20169602 ttccattgttctatgtttctgggttcaaaccctctcaaacagctacatgttggtgagctcaatgaattacaacttgcaaatgccccacataagtcgtaaa 20169701  T
Q  263 catcacactatgattctcggcttgtccat 291  Q
    ||||||||| |||||| || |||||||||    
T  20169702 catcacactttgattcccgacttgtccat 20169730  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 293
Target Start/End: Complemental strand, 20272472 - 20272206
Alignment:
Q  29 accttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactccaaaggt 128  Q
    |||||| |||||||||| ||||| || ||  || | |||||||| ||||| |||||||||||| ||||||||||||  || |||| | |||| |||||||    
T  20272472 accttcagcaaaatctggaactttaatcgtctgtagtttcaaaatcccatcttcctttgtacttgtggttttattgtggaccctttcgcactgcaaaggt 20272373  T
Q  129 gtcctcgtaacacaccgacccgtccaattatgtatactccattct--tctgtttctgggtacaaatcctcgaaaacagctacatattggcgagctcatta 226  Q
    ||| || ||||||||| ||| | ||| || | |||  |||||||   | | ||| | ||| ||||||||   | |||||| |||||||| ||| ||  |     
T  20272372 gtcttcctaacacacccaccagaccagttgtttattttccattcacgtatatttttaggttcaaatcctttcagacagctgcatattggtgaggtcgatg 20272273  T
Q  227 aactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgtccatgt 293  Q
    |||||||| ||||||||||  |||||||||||||||||||||||| ||| |||||||||||||||||    
T  20272272 aactacagattgcaaatgcgccacatataccataaacatcacactctgaatctcggcttgtccatgt 20272206  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 20302487 - 20302353
Alignment:
Q  23 agctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactcc 122  Q
    ||||||||||||||||||||| | ||||| ||||   ||||||||||||||||||| ||| |||||||| |||||||||||| ||| |||| |||||| |    
T  20302487 agctacaccttctgcaaaatcgggaactttaaccatctgcaatttcaaaaacccatcttcttttgtacttgtggttttattgttgaccctttcacactgc 20302388  T
Q  123 aaaggtgtcctcgtaacacaccgacccgtccaatt 157  Q
    |||| | | ||| ||||||||| ||  ||||||||    
T  20302387 aaagatcttctcctaacacacccactagtccaatt 20302353  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 293
Target Start/End: Complemental strand, 20278182 - 20277950
Alignment:
Q  63 aatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtccaattatgta 162  Q
    |||||||||||| ||| ||||||| | |  |||||||||||| |   ||| | ||||| |||||  || ||| ||||||||| ||| ||||| ||||||     
T  20278182 aatttcaaaaacgcatcttcctttctccgtgtggttttattgttatccctactacactgcaaagtggttctcctaacacacccaccggtccagttatgtc 20278083  T
Q  163 tactccattcttct--gtttctgggtacaaatcctcgaaaacagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccata 260  Q
     | ||||||||| |  |||||| ||| |||||||||  | |||| |||||||||| |||  || | |||||||||||||||||||  |||||||||| ||    
T  20278082 cattccattcttgtatgtttctaggttcaaatcctctcagacagatacatattggtgagaacaatgaactacagcttgcaaatgccccacatataccgta 20277983  T
Q  261 aacatcacactatgattctcggcttgtccatgt 293  Q
    |||||||||||   | ||| |||||||||||||    
T  20277982 aacatcacactccaagtcttggcttgtccatgt 20277950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 293
Target Start/End: Complemental strand, 20282711 - 20282528
Alignment:
Q  114 ccacactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttct--gtttctgggtacaaatcctcgaaaacagc--taca 209  Q
    ||||||| |||||| || ||| ||||||||| ||| ||||| ||||||||| ||||||||| |  |||||| ||| |||||||||  | ||||   ||||    
T  20282711 ccacactgcaaaggggttctcctaacacacccaccggtccagttatgtatattccattcttgtatgtttctaggttcaaatcctctcagacagagataca 20282612  T
Q  210 tattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgtccatgt 293  Q
    |||||| |||  || | || ||||||||||||||||  |||||||||||||| ||||||||| ||| ||| ||||| |||||||    
T  20282611 tattggtgagaccaatgaattacagcttgcaaatgccccacatataccataagcatcacactctgagtcttggcttctccatgt 20282528  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 20300414 - 20300263
Alignment:
Q  23 agctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactcc 122  Q
    |||||||||||||||||| || | ||||| ||||   |||||| ||||||| |||| |||||||||||| |||||||||||| ||| ||||  |||||      
T  20300414 agctacaccttctgcaaattcaggaactttaaccatctgcaatatcaaaaatccatcttcctttgtactggtggttttattgttgaccctttaacactga 20300315  T
Q  123 aaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattctt 174  Q
    |||| ||||||| | ||||||| ||| |||||||| | | || |||||||||    
T  20300314 aaagctgtcctcctgacacacccaccagtccaattgtttctattccattctt 20300263  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 20064097 - 20064191
Alignment:
Q  199 aaacagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgtccatgt 293  Q
    |||||||| |||||||| | | ||| | |||||||||||||||||||  ||||| ||||||| |||||||||| ||||| |||||| ||||||||    
T  20064097 aaacagctgcatattggtgtgttcaatgaactacagcttgcaaatgccccacatgtaccatatacatcacactctgattttcggctagtccatgt 20064191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 20090468 - 20090545
Alignment:
Q  23 agctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggtttt 100  Q
    ||||||||||||||||||||||| ||||| ||||   | ||||||||||||||||| |||||||||| | ||||||||    
T  20090468 agctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggtttt 20090545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 20230148 - 20230055
Alignment:
Q  199 aaacagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgtccatg 292  Q
    |||||||| || ||||||| ||||| | || ||||||||| ||||||  |||||| ||||||||||||||||| ||| | | ||||| ||||||    
T  20230148 aaacagctgcaaattggcgtgctcaatgaattacagcttgtaaatgccccacatagaccataaacatcacactctgagtattggcttttccatg 20230055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 20287911 - 20287673
Alignment:
Q  29 accttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttc---ctttgtactcgtggttttattgctgatccttccacactccaaa 125  Q
    ||||| ||||||||| | ||||| ||||   | |||||||||||| |||| |||   ||||||||| ||||| |||||  ||| |||| |||||| ||||    
T  20287911 accttgtgcaaaatcaggaactttaaccatcttcaatttcaaaaatccatcttccttctttgtacttgtggtgttattattgaccctttcacactgcaaa 20287812  T
Q  126 ggtgtcctcgtaacacaccgacccgtccaattatgtatactccattc--ttctgtttctgggtacaaatcctcgaaaacagctacatattggcgagctca 223  Q
     || ||||  ||||||||| ||| ||||| || ||| || |||| ||   | |||| |||||| |||||||||  ||||| || ||||||||  |  |||    
T  20287811 agtatccttctaacacacccaccagtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatattggtaacttca 20287712  T
Q  224 ttaaactacagcttgcaaatgctgcacatataccataaa 262  Q
     | ||||||||||||| |||||  |||||||||||||||    
T  20287711 atgaactacagcttgcgaatgccccacatataccataaa 20287673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 269
Target Start/End: Complemental strand, 20242275 - 20242028
Alignment:
Q  24 gctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactcca 123  Q
    |||| |||||| |||||||||| ||||| ||||   || | ||||| |||||||| ||||||| |||| |||||||||||| ||| ||||  ||||  ||    
T  20242275 gctaaaccttcagcaaaatctggaactttaaccatctgtagtttcagaaacccatcttcctttctacttgtggttttattggtgacccttttacacagca 20242176  T
Q  124 aaggtgtcctcgtaacacaccgacccgtccaattatgtatactccatt--cttctgtttctgggtacaaatcctcgaaaacagctacatattggcgagct 221  Q
    ||||| ||  | |||||||||  || ||||| || | | |||||||||  |   | ||||||||| ||||||||   ||||| || || | ||| |||||    
T  20242175 aaggtctctgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatcctttcaaacaactgcaaactggtgagct 20242076  T
Q  222 cattaaactacagcttgcaaatgctgcacatataccataaacatcaca 269  Q
    || | || ||||||||| |||  || |||||| |||||||||||||||    
T  20242075 caatgaattacagcttgtaaaatctccacatagaccataaacatcaca 20242028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 269
Target Start/End: Complemental strand, 20262836 - 20262661
Alignment:
Q  96 gttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccatt--cttctgtttctgggtacaaatc 193  Q
    |||||||||||||||||| |||||| ||||||| ||| | |||||||||  || ||||| || | | |||||||||  |   | ||||||||| ||||||    
T  20262836 gttttattgctgatcctttcacactgcaaaggtctccgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatc 20262737  T
Q  194 ctcgaaaacagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcaca 269  Q
    ||   ||||| || ||||  || ||||||| | || ||||||||| |||| || |||| | |||||||||||||||    
T  20262736 ctttcaaacaactgcataccggtgagctcaatgaattacagcttgtaaattctccacagagaccataaacatcaca 20262661  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 20230320 - 20230205
Alignment:
Q  29 accttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactccaaaggt 128  Q
    |||||| |||||||||| ||||| ||||   || | |||||||||||| | ||||||| |||  ||||||||||||| |||||||  ||||| ||| |||    
T  20230320 accttcagcaaaatctggaactttaaccatctgtagtttcaaaaacccgtcttcctttctacctgtggttttattgccgatccttttacactgcaatggt 20230221  T
Q  129 gtcctcgtaacacacc 144  Q
     ||| | |||||||||    
T  20230220 ttccgcctaacacacc 20230205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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